Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc199g00009 ATGAGTTGTTTCAGATGGATGAGGTTTGCAGAATCCAAATTACCACAAGAAGAAGTTGATGCTCTTAGAGAAATCACTTCTGTGATGGGTGCCACTCACTGGGAATTTGATGCTGATACTTGTCAAGTAAAAAAGATGACATTAGAGCCACCCATTGAAGTTAATAAAAGCAGCATTGGTTGTGAGTGCCCTCCTGAAAAGGATAGCTTCTGTCATGTAGTAAGGATGGATTTCATCAGGTACAATCTTCCTGGCAGTCTTCCACCTCAACTGGTTAAGCTTCCTTACCTCAGAGAAATTGAGTTTTCTTTCAACTACCTAAACGGTACGATCCCGAAGGAATGGGCTTCAATGAAGCTGACTAAAATTGTTCTAATGACTAATCGTTTATCCGGGGAAATTCCGAAGGAGTTGGGAAACATTACAACTCTAACGAACCTGGATCTTGAAGCCAACCAATTCTCTGGTCATGTACCCTCTCAACTTGGAAATCTGATTAACCTGCACAGATTGGTTTTGTCATCCAATAATTTATCTGGGAACCTGCCAGAGACATTTGCTCTGTTATATAATTTATTGGATTTTAGGATAAGTGATAATAGTTTCAGTGGAAAAATACCAAGCTTCATTCAGAACTGGAAGCAACTTCAAAGACTAGAAATGCATGCAAGTGGACTGGAGGGACCAATCCCATCCAATATATCTCTTTTGAGTAATGTAACTATTTTAAGGATTAGTGACATAGATGGTCCAAGTCAGACTTTTCCAGTTTTAAGCAACATGAAAGTGATGAGAAGATTGGTTCTGAGAAATTGCAATATTACTGGAGAGATTCCTATTGACATCTTGAAAATGGGGAATTTGAAAATGCTGGATGTCAGTTTTAATAACTTGGTTGGGCAAATTCCAGCGATTGAACCCCCGGGGCCTCTGAAATTCCTCTTCCTAACTGGCAACAAACTAAGTGGTAATGTACCTGACTCAATCTTGCTGGCTGGAGGCAATGTCGATCTTTCTTATAACAACTTTACGTGGCAAGGACCTGGGCAATCTGCTTGTCAAGAAAACATGAATTTAAACATAAACTTGTTCCGGAGTTCTTCGGGGACCAATAAATTACAGGATGTTCTCCCATGTTCAAAGACCTTTAAGTGTCCTAGATATTCAAGGTGTTTGCATGTTAATAGTGGTGGAAAGGATGTAATGATAAAAGAAAAAGGCGAAAATATCTTCTACATAGGGGATGTTGCTGATGGTGGTACTGCTGAATATTATAATGACAATGAAAATCTTTGGGGGTTTAGCAGCACTGGTGACTTCATGGATGATAATGACATCCAAAATACACGTTACGCCGTGTCATTGCAACATTCAAATCTGTCTGAATTATATGCAACAGCACGACTGTCCCCTATTTCGCTCACCTATTTTCATTATTGCTTGGAAAATGGGAATTACACAGTAAAGCTACACTTTGCAGAAATACAATTTACCAATGATAGGACATCTAACTGTCTTGGGAGACGCTTATTTGATATCTATATCCAGGAAAGATTAGTTTGGAAGGATTTTAACATCGAAGAGAAAGCACATGGTGCTCAAAAACCATATACAGCAACAAAATATAACGTCGGCGTAACAGACAATATTCTGGAGATTCGACTCTACTATGCCGGCAAGGGAACTTCAAAGATGCCTTCTAAAGCAGCTTATGGTCCCCTCATATCAGCTTTCTCTATTGTCTCTAATTCTAAACCTTGTTCAGACCAAAACAAAGCAGTGAATAACATAATCGTTGGAATTGGATTTGGAATTTCAGCTACTGGCCTAGTCCTTATCATAGTAGGGATCCTTTGGTGGAAAGGCTTCTTCAGAGGAATAATTAAGACAGGAAAAGGTGGGGATGGACATTGTCAGACAGGGACATATACATTAGAACAAATTAGAGCTGCCACGAATGATTTCGCTCCTGCTAACAAGATTGGGGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAGTTATCCGATGGTACTTGGGTAGCAGTCAAACAGCTTTCATCGAAATCGCGGCAGGGGAATCGTGAATTTTTAAATGAGATAGCCATGATATCTTGTTTGCAACACCCTAATCTTGTTAAACTTCATGGATTTTGCATTGAAAACAATCAACTAATGTTGGTGTATGAGTACATGGAAAATAATTGCTTAGCTCGTGCTTTATTCAGCTCAGAGAATCAGCTTAACCTTGATTGGCCAACAAGGCATAGAATCTGTATTGGCATAGCAAAAGGCCTTGCATTTCTGCATGAAGAATCAACACTCAAGGTTGTTCATCGAGATATCAAATCTACTAATGTGTTACTTGATGGGAACTTAAACCCCAAAATATCCGATTTCGGGTTGGCTAGGCTTGATGAGGATGAAAGGACCCATATCAGCACTAGAGTGGCTGGAACAGTGGGATACATGGCACCGGAATATGCATTATGGGGTCACCTAACTTACAAGGCTGATGTTTACAGTTATGGAATTGTGGTCTTGGAAATCGTCAGTGGGAAGAACAATAAAAATTACATGGCAAGTGATGATTGTTTTTGTCTTTTAGATAAGGCACTTTATCTGCTATCCACTCAAAACATAATGGAACTGGTTGATGAAAGGTTGGGATTGGAGGTAAACCCCACCGAAGCAGAAAACCTGTTGAAAGTAGCTCTGCTGTGCACAAATGTATCGCCGTCGCATAGGCCTACAATGTCAGAGGTTGTGAACATGCTTGAAGAAAGAATGAGCATCCCAGATGTTATCCCGGAAACAAGTCTATTCCCGGAAGATTTAAGGTTTAAAGCCACAAGAGAGATCTATCAACATGGTGAAAATCAAAGTTTGACATCAAGCCAAACAGACAATTCAATAGGATATTTTGTACCTGCATCTTCCTCAGTTTCTGGCAATGAAATGCATGAAATAAGCTCAAAATCATAG 2982 0.3977 MSCFRWMRFAESKLPQEEVDALREITSVMGATHWEFDADTCQVKKMTLEPPIEVNKSSIGCECPPEKDSFCHVVRMDFIRYNLPGSLPPQLVKLPYLREIEFSFNYLNGTIPKEWASMKLTKIVLMTNRLSGEIPKELGNITTLTNLDLEANQFSGHVPSQLGNLINLHRLVLSSNNLSGNLPETFALLYNLLDFRISDNSFSGKIPSFIQNWKQLQRLEMHASGLEGPIPSNISLLSNVTILRISDIDGPSQTFPVLSNMKVMRRLVLRNCNITGEIPIDILKMGNLKMLDVSFNNLVGQIPAIEPPGPLKFLFLTGNKLSGNVPDSILLAGGNVDLSYNNFTWQGPGQSACQENMNLNINLFRSSSGTNKLQDVLPCSKTFKCPRYSRCLHVNSGGKDVMIKEKGENIFYIGDVADGGTAEYYNDNENLWGFSSTGDFMDDNDIQNTRYAVSLQHSNLSELYATARLSPISLTYFHYCLENGNYTVKLHFAEIQFTNDRTSNCLGRRLFDIYIQERLVWKDFNIEEKAHGAQKPYTATKYNVGVTDNILEIRLYYAGKGTSKMPSKAAYGPLISAFSIVSNSKPCSDQNKAVNNIIVGIGFGISATGLVLIIVGILWWKGFFRGIIKTGKGGDGHCQTGTYTLEQIRAATNDFAPANKIGEGGFGPVYKGQLSDGTWVAVKQLSSKSRQGNREFLNEIAMISCLQHPNLVKLHGFCIENNQLMLVYEYMENNCLARALFSSENQLNLDWPTRHRICIGIAKGLAFLHEESTLKVVHRDIKSTNVLLDGNLNPKISDFGLARLDEDERTHISTRVAGTVGYMAPEYALWGHLTYKADVYSYGIVVLEIVSGKNNKNYMASDDCFCLLDKALYLLSTQNIMELVDERLGLEVNPTEAENLLKVALLCTNVSPSHRPTMSEVVNMLEERMSIPDVIPETSLFPEDLRFKATREIYQHGENQSLTSSQTDNSIGYFVPASSSVSGNEMHEISSKS 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc199g00009 993 Pfam Malectin domain 391 578 IPR021720 -
Stsc199g00009 993 FunFam Putative LRR receptor-like serine/threonine-protein kinase 731 937 - -
Stsc199g00009 993 Gene3D Transferase(Phosphotransferase) domain 1 731 933 - -
Stsc199g00009 993 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 183 249 - -
Stsc199g00009 993 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 389 583 - -
Stsc199g00009 993 Gene3D Phosphorylase Kinase; domain 1 636 730 - -
Stsc199g00009 993 CDD STKc_IRAK 661 927 - -
Stsc199g00009 993 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 20 182 - -
Stsc199g00009 993 Pfam Protein tyrosine and serine/threonine kinase 659 925 IPR001245 GO:0004672|GO:0006468
Stsc199g00009 993 SUPERFAMILY L domain-like 67 327 - -
Stsc199g00009 993 Gene3D Ribonuclease Inhibitor 185 249 IPR032675 -
Stsc199g00009 993 Gene3D Ribonuclease Inhibitor 23 184 IPR032675 -
Stsc199g00009 993 Gene3D Ribonuclease Inhibitor 250 362 IPR032675 -
Stsc199g00009 993 ProSiteProfiles Protein kinase domain profile. 655 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc199g00009 993 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 629 730 - -
Stsc199g00009 993 SMART serkin_6 655 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc199g00009 993 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 21 963 - -
Stsc199g00009 993 Gene3D - 390 585 - -
Stsc199g00009 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 776 788 IPR008271 GO:0004672|GO:0006468
Stsc199g00009 993 SUPERFAMILY Protein kinase-like (PK-like) 639 960 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc199g00009 Stsc-Chr199 53588 59910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc199g00009 3 820 Receptor kinase-like Gene Family AT1G29750 58.738 0.0 964
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc199g00009 PK_Tyr_Ser-Thr 2.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc199g00009 - - mtr:11406167 1424.45