Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc199g00003 ATGCGGGGGAACAGTTATAACTGTATTCCTATAACACCCAGATCGAGATTAGAGAGGCTATTGAGGGAAAGAGAGCTAAGAAAGTCGAACAGGTATTTTGAGGAGGCAAGAGATGGTGACATTTATGGTGACACGTTAACTGAGAGTGACAGTTTTAATTCTCTCAATGAGGAAGACATTTCTGAAGCACTTGCTGTTGCAAGAGTTTTTCCAGACAGAAATCAATGGCCAGAAGAGCGGCCACGCAAACAACGGTTGTTGGTGGTAGCTAATAGGTTGCCTGTATCAGCTGTTAGGGAGGGTGTGGACTCATTTCACCTTGAGATCAGTGTTGGCGGCCTAGAGTTTGAAACTAGATGGATTGGGTGGGCTGGTGTCAATGTATCTGATGGTGTTGGGCAGAAAGCATTGACTAAAGATTTGGCTGAAATGAGATGCATTCCAGTATTTCTTGATGAGCATATTGTGAATCAGTACTATAACGGTTACTGCAACAACATCTTATGGCCTCTTTTTCATTATCTTGGACTTCCACAAGAAGACAGACTTGCTACCACTCGTAGCTTCCAATCTCAATTTGATGCATATAAGAAGGCAAACCAGATGTTCGCTGATGTAGTAAATAAGTACTATAAGGAAGGAGATGTTGTTTGGTGCCATGATTACCATCTAATGTTCCTCCCAAAATGTTTAAAAGAATACAATGACAAAATGAAAGTTGGCTGGTTCCTTCATACTCCTTTTCCTTCCTCAGAAATACATAGGACTTTGCCGTCGAGAACAGAGCTTTTGAGATCTGTACTTGCTGCTGACTTGGTAGGATTCCATACTTATGATTATGCCAGACATTTTGTAAGTGCTTGTACTCGCATTCTTGGGCTTGAAGGTACACCTGAAGGAGTAGAAGATCAAGGGAAGCTAACTCGTGTGGCTGCGTTTCCTATTGGGATTGATTCTGATCGGTTTATTCGGGCCCTGGAACTCCCTGAAGTTCAGGAGCACATGAAAGAACTGAAAGAAAGATTTGCAGGCAGAAAGGTAATGTTGGGTGTTGATCGTCTTGATATGATAAAAGGAATTCCGCAAAAGATATTGGCATTTGAAAAGTTCCTTGAGGAGAACCCACGCTGGCGTGATAAAGTTGTCTTGCTGCAAATTGCTGTACCAACTAGGACAGATGTTCCTGAATACCAAAAGCTTACAAGTCAGGTGCATGAGATTGTTGGCCGCATCAATGGAAGATTTGGAACCCTTACTGCCGTTCCAATACACCATCTTGATCGGTCACTTGACTTTTATGCATTATGTGCACTCTATGCTGTTACTGATGTAGCGCTTGTTACATCTCTAAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTCGCATGTCAAGCTTCCAAGAAGGGGGTTCTAATTTTAAGCGAGTTTGCAGGAGCTGCACAGTCTCTTGGTGCTGGTGCTATCTTGGTAAATCCATGGAATGTCACAGAGGTTGCTGCTTCTATTTGTTATGCATTGGATATGCCAGCTGATGAAAGAGAAAAACGGCATCTAGTTAACTTCAAGCATGTGACAACTCACACTTCACAAGAATGGGCAGCAACTTTTGTGAGTGAACTGAATGATACCATTGTCGAAGCCCAGCTTAGGACAAGACAAGTTCCCCCTTTACTTCCCAAGGAAGTGGCAGTTGATTGTTATTCAAAATCAAATAACCGATTAATTATACTGGGTTTCAATGCCACTTTGACAGAACCAGTGGATGCCCTTGGAAGGGGTGGTCAAATTAGAGAAATGGAACTTAGATTGCATCCAAATATAAAGAAACCTTTAAAGAAGTTATCTGATGATCCAAAGACAACAATTGTTGTTCTGAGTGGGAGCGATCGAACTGTCCTGGACAAAAATTTCAGTGAATACAATCTGTGGTTAGCTGCAGAAAATGGGATGTTTCTGCGGCATACTTCAGGTGAATGGATGACAACCATGCCTGAAAATTTACACATGGATTGGGTTGATAGCGTAAAGCATGTTTTTGAGTATTTTACCGAAAGAACACCACGGTCTCATTTTGAGCTTCGTGAAACTTCAGTTGTATGGAATTACAAGTATGCAGATATTGAGTTTGGGAGGATTCAAGCAAGAGATTTGCTTCAGCATCTTTGGACAGGACCAATATCGAATGCATCTCTTGATGTTGTCCAAGGTGGTCGATCTGTTGAGGTCAGGGCAATTGGTGTCTCAAAGGGAGCAGCTATTGACCGCATCTTAGGAGAGATTGTTCATGACAAAGGAATGAAGGCTCCAATTGATTATGTCATATGCATCGGGCACTTTCTTCCAAAGGATGAAGATGTCTATAAATTTTTTGAACCAGAACTTCCTTGTGAATCATCAGCATTAGTAAGAGCTATGCCATCCAATTCTTTAAGGTCATCACCTCAGCAAAAATTTCCATTCAGCAAAAATGGGTCTAAGTCAGGTCGCTATAAGAAGCAACGCTCAATGTCAACCATAGAACAGTTAGAAATTGATCATGCAAGTGGCGATCCATGGATACCAACATATCATGATAGAGTATCACTACATGAGGGCTCTTCAGTGCTTGATCTTCAAGGTGATAATTACTTCTCTTGTGCTGTTGCACGCAAGAGATCAAGTGCACGCTACTTACTTAAAACCTCAAATGATGTTGTCAATCTCTTAAGTAACATGGCAGATCATTCATCAACAGGATCAACTTAG 2748 0.4152 MRGNSYNCIPITPRSRLERLLRERELRKSNRYFEEARDGDIYGDTLTESDSFNSLNEEDISEALAVARVFPDRNQWPEERPRKQRLLVVANRLPVSAVREGVDSFHLEISVGGLEFETRWIGWAGVNVSDGVGQKALTKDLAEMRCIPVFLDEHIVNQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQMFADVVNKYYKEGDVVWCHDYHLMFLPKCLKEYNDKMKVGWFLHTPFPSSEIHRTLPSRTELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSDRFIRALELPEVQEHMKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPRWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFYALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNVTEVAASICYALDMPADEREKRHLVNFKHVTTHTSQEWAATFVSELNDTIVEAQLRTRQVPPLLPKEVAVDCYSKSNNRLIILGFNATLTEPVDALGRGGQIREMELRLHPNIKKPLKKLSDDPKTTIVVLSGSDRTVLDKNFSEYNLWLAAENGMFLRHTSGEWMTTMPENLHMDWVDSVKHVFEYFTERTPRSHFELRETSVVWNYKYADIEFGRIQARDLLQHLWTGPISNASLDVVQGGRSVEVRAIGVSKGAAIDRILGEIVHDKGMKAPIDYVICIGHFLPKDEDVYKFFEPELPCESSALVRAMPSNSLRSSPQQKFPFSKNGSKSGRYKKQRSMSTIEQLEIDHASGDPWIPTYHDRVSLHEGSSVLDLQGDNYFSCAVARKRSSARYLLKTSNDVVNLLSNMADHSSTGST 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc199g00003 915 Gene3D Glycogen Phosphorylase B; 78 323 - -
Stsc199g00003 915 Gene3D - 666 746 - -
Stsc199g00003 915 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 78 907 IPR001830 GO:0003824|GO:0005992
Stsc199g00003 915 Gene3D - 600 760 IPR023214 -
Stsc199g00003 915 Pfam Glycosyltransferase family 20 115 542 IPR001830 GO:0003824|GO:0005992
Stsc199g00003 915 CDD HAD_TPP 575 794 - -
Stsc199g00003 915 Pfam Trehalose-phosphatase 599 809 IPR003337 GO:0003824|GO:0005992
Stsc199g00003 915 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 324 526 - -
Stsc199g00003 915 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 77 323 - -
Stsc199g00003 915 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 85 542 IPR012766 GO:0003825|GO:0005992
Stsc199g00003 915 Gene3D Glycogen Phosphorylase B; 324 526 - -
Stsc199g00003 915 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 666 746 - -
Stsc199g00003 915 MobiDBLite consensus disorder prediction 808 824 - -
Stsc199g00003 915 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 84 545 - -
Stsc199g00003 915 FunFam Alpha,alpha-trehalose-phosphate synthase 600 671 - -
Stsc199g00003 915 MobiDBLite consensus disorder prediction 808 834 - -
Stsc199g00003 915 CDD GT20_TPS 85 542 IPR001830 GO:0003824|GO:0005992
Stsc199g00003 915 SUPERFAMILY HAD-like 574 762 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc199g00003 Stsc-Chr199 7120 13451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc199g00003 1 912 Trehalose Biosynthesis Gene Families AT1G78580 73.178 0.0 1364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc199g00003 K16055 - gmx:100816642 1514.98