Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc199g00001 ATGGGAATACAGGGTTTATTGCCGCAGTTGAAATCGATAATGTCTCCGATTCACATCAAGGAGCTTCAAGGGTGCAGTGTTGCTGTCGACACATATTCATGGCTCCACAAAGGCGCACTCTCTTGCAGCACCCAACTCTGCAAAAACATTCCCACAAACAGGCACATTGAGTATTGCATGCATAGGGTCAATTTGCTGCGCCATTTCGGTATCAACCCTATTCTTGTATTTGACGGTGGACTTCTACCAATGAAGGCCGAACAAGAGAATAAGCGTGCCAGGGTGAGAAAGGAAAATTTTGCACGAGCTGTTGAACATGAATCTAATGGAAATAACACTGCTGCTTTTGAGTGCTACCAGAAAGCTGTTGATATTTCGCCTCTCATTGCGCGCGAGCTGATTCAGGTATTGAGGCAGGAGAATGTGCAGTATGTTGTAGCTCCTTATGAGGCTGATGCTCAGATGGCTTTCTTGGCGATTAGTGGAAAGGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGGTGCCCAAGGATTATCTTCAAAATGGACAAGTTTGGTCAAGGAGTTGAGTTTCGGTACTCCATGTTGCACAAGAATAAGGAGCTTTGTTTTGAAGGATTCGACAGACAAATGCTTCTCGAAATGTGTATCTTGAGTGGCTGTGACTATCTTCAGTCCTTGCCTGATATAGCGCAAGGCATAGCAAAAGGAGATATCGATCCGTTTACCAAAATGCCATTTGAGGGGGTGAATCTTAATGACAGATCAGCAACTGCTGGAACTTCACAATTTAAAACTCTTCATTCTGAAAGTGTTAAGAAAAAGATTGATCTCCCTGTGCAAAAGAATCTCTTGACTAAGTATTTTTGTTTTGCATCTGTTGAAGCAAAAAGGAATTTCAGAGCACCTCGGGTATCACCCACTCCTGCTAATCAAGGTACATTTGATTCCTCTTCTACCAATTCCATGGAACACGAGACTTCAGAGGCTATGACTAGCAAGACAAAGAACTCCACTGCATCTTTAGTTAACTATGAGAATTCGGGCTCAAACAGTAGTCCTCCTCCGGCAAATGATTTTGTAAGTTGCCTAACCTAA 1110 0.4279 MGIQGLLPQLKSIMSPIHIKELQGCSVAVDTYSWLHKGALSCSTQLCKNIPTNRHIEYCMHRVNLLRHFGINPILVFDGGLLPMKAEQENKRARVRKENFARAVEHESNGNNTAAFECYQKAVDISPLIARELIQVLRQENVQYVVAPYEADAQMAFLAISGKVDAVITEDSDLIPFGCPRIIFKMDKFGQGVEFRYSMLHKNKELCFEGFDRQMLLEMCILSGCDYLQSLPDIAQGIAKGDIDPFTKMPFEGVNLNDRSATAGTSQFKTLHSESVKKKIDLPVQKNLLTKYFCFASVEAKRNFRAPRVSPTPANQGTFDSSSTNSMEHETSEAMTSKTKNSTASLVNYENSGSNSSPPPANDFVSCLT 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc199g00001 369 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Stsc199g00001 369 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Stsc199g00001 369 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Stsc199g00001 369 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Stsc199g00001 369 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Stsc199g00001 369 SMART xpgineu 138 209 IPR006086 GO:0004518
Stsc199g00001 369 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Stsc199g00001 369 SMART xpgn3 1 99 IPR006085 GO:0004518
Stsc199g00001 369 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Stsc199g00001 369 Gene3D - 209 293 - -
Stsc199g00001 369 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Stsc199g00001 369 Gene3D - 1 207 - -
Stsc199g00001 369 MobiDBLite consensus disorder prediction 307 369 - -
Stsc199g00001 369 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Stsc199g00001 369 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 312 IPR006084 -
Stsc199g00001 369 MobiDBLite consensus disorder prediction 309 369 - -
Stsc199g00001 369 FunFam Exonuclease 1, putative 1 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc199g00001 Stsc-Chr199 2959 5243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc199g00001 1 235 Core DNA Replication Machinery Family AT5G26680 28.226 9.00e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc199g00001 K10746 - gmx:100798062 420.624