Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc198g00006 ATGGCTGATAATGATATTAAACACATTTTTTTCTCCCAAATCCCTCAAATTTCTAAACCTGAATCCTTAGATCACCATAGCCTTGGTAGTTTTGCTACCCCACCTAGTGATTCTGCAAACTCGGCCACCAAAAGTGATGCAAACCAAACTGGTAATAAAAGAAAAACAATCTCTGATGTTGAGAGGTACATCCTCATACCCCCTGTAAACACTAACAATGATGGCAATCCTTTCCTAGGATTGAAAAAACCTCGTGGTAGGCCACATGGCTCAAAGAACAAGCCGAAGCTACCAATTTTCATAAGGAAGGTAAATGAACATGGCATGCATCCGATCCTTATTCAGATAGCCCCTGGAGTTGATGTGATTGGGGCTTTAATCAACTTCGCCTTGCGCCGCCACATTAGAATATTGATTCTCAGTGCTTGTGGATCGATCTCCGAGGCAGCGATTCACAACACATTACCTTTAAACACTAACGCAATTGGCTTATCCATGAGAGGACCGTTTAATATGATGTCCCTCTCAGGAATCTATTATGATAGCCATGTGCAGCCTGCATGTTCTTCTTTCTCAATTCTTCTTGGAGGAACACATGGCCAAGTTTTTGGTGGGATCGTTGCTAGGAAGGTTATGGTAGCAGGAACTATTAAAGTTATGGCTGCCTCATTCAAGAGGACTGAGTTTTATGTGCTGCAACTCAATGCAGATGGAGGGGAAGACAACGTTAATAGCAACGAGAATAATAACGTCGTTAGGGTATCTACATATAAAGCTGGTAATCCTAATATAGTTACTCGACAAACTGCGGTTACTAAACTCGTTCCTCTTCATGTTGGCAACTATAGTGGTGGCGGTGGCAACGTTACTGATGATGCTACTACTAATGTGAAGAATGAGATAGTGAATGTCAAAAAGTTTAAGGATGTGAAAGGCTCTGATGATGAGAAGCAGGAACTTGAGGACGTTGTTGAGTAA 978 0.4172 MADNDIKHIFFSQIPQISKPESLDHHSLGSFATPPSDSANSATKSDANQTGNKRKTISDVERYILIPPVNTNNDGNPFLGLKKPRGRPHGSKNKPKLPIFIRKVNEHGMHPILIQIAPGVDVIGALINFALRRHIRILILSACGSISEAAIHNTLPLNTNAIGLSMRGPFNMMSLSGIYYDSHVQPACSSFSILLGGTHGQVFGGIVARKVMVAGTIKVMAASFKRTEFYVLQLNADGGEDNVNSNENNNVVRVSTYKAGNPNIVTRQTAVTKLVPLHVGNYSGGGGNVTDDATTNVKNEIVNVKKFKDVKGSDDEKQELEDVVE 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc198g00006 325 SUPERFAMILY AF0104/ALDC/Ptd012-like 108 227 - -
Stsc198g00006 325 ProSiteProfiles PPC domain profile profile. 106 246 IPR005175 -
Stsc198g00006 325 Coils Coil 310 325 - -
Stsc198g00006 325 MobiDBLite consensus disorder prediction 75 95 - -
Stsc198g00006 325 MobiDBLite consensus disorder prediction 29 54 - -
Stsc198g00006 325 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 46 251 IPR014476 GO:0003680
Stsc198g00006 325 CDD DUF296 111 224 IPR005175 -
Stsc198g00006 325 MobiDBLite consensus disorder prediction 22 54 - -
Stsc198g00006 325 Pfam Plants and Prokaryotes Conserved (PCC) domain 111 225 IPR005175 -
Stsc198g00006 325 Gene3D - 109 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc198g00006 Stsc-Chr198 58339 62174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc198g00006 81 232 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.121 1.30e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc198g00006 - - adu:107496595 300.441