Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1989g00003 ATGGCTTTCAAATTTTTTGGCTTTGGTGATTCAAAGAAGAAGAAAAAATATCCAACGGTAATAGAAGAGCTATGCCATCATTTTTCATTTAAAGATCTTAGAGATTCAACCAACGGCTTTGACGTGAGACTTAAAATTGGACGAGGCTGCAGTAGTAAGGTGTACAAAGGTTGTCTCAATCCCAAACATAATTATAATGGTGATGAAGAAACTGATTACACGATCGCACTGAAGGTGCTGGCTCGGAACTCCCATCAAGGTTCCGTTCAATTCAAGAAGGGAATTGAGATGCTATGTCAGCTTCGTCACCCTAATGTAATATCTCTTATAGGCTTTTGCTACCAAGAAAAGGAAATGATTGGTGTATATGAGTACATGCCCAATGGAACACTCAGTGATTACATGCGTGACAAGAACAGGGAACCACTATCATGGAACAAGAGACTAGAAATCTGCATCGGAGTAGCACGTGGTCTACACTACCTTCACGCTGGAGCCAAGCGTTGTATCGTTCATCGTGACATCAAACCTAGTAACATTCTACTGGATAGGAATATGGTTCCCAAAATCTCAGATTTTGGTCTATCATTGCAGGGAGCACTCTCTACATCAAAGCCTAAAAGGATTCAAGTAGATCACGTTGCAGGTACCCTTGGATACTTAGCTCCTGAACAGTTTCTGGATAAGGTTGTTACTGATAAAACTGATGTTTTCTCCTTTGGTATGGTTCTAATACACGTGGTGACCAATACCGATTTGCACCACGTCTTAAGGGAAATTCAAGATAACCACATCACTCTTGAGGTGAGAATAGATCCAATTCTAAAAGGAAAGATTGCGTCAGAAAGTTGGCAAGTTTTCACTAATGTGATACAAAGTTGCTTGGAGTATGAAGCAGATGAGCGACCAACAATGGGTGAAGTAGAGGTATTGCTTGAACATGCTCTTTCATTGCAGCAACAAGCTGATATTACAAACATCAATAATGCTGCTCACTATACTTTATTATCCACTACTCACTTGTCAGATTTACTCAAATCTTCAGATATTATAAATAAAGATTATCTGGCCTATATATGA 1080 0.3935 MAFKFFGFGDSKKKKKYPTVIEELCHHFSFKDLRDSTNGFDVRLKIGRGCSSKVYKGCLNPKHNYNGDEETDYTIALKVLARNSHQGSVQFKKGIEMLCQLRHPNVISLIGFCYQEKEMIGVYEYMPNGTLSDYMRDKNREPLSWNKRLEICIGVARGLHYLHAGAKRCIVHRDIKPSNILLDRNMVPKISDFGLSLQGALSTSKPKRIQVDHVAGTLGYLAPEQFLDKVVTDKTDVFSFGMVLIHVVTNTDLHHVLREIQDNHITLEVRIDPILKGKIASESWQVFTNVIQSCLEYEADERPTMGEVEVLLEHALSLQQQADITNINNAAHYTLLSTTHLSDLLKSSDIINKDYLAYI 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1989g00003 359 PANTHER OS07G0166700 PROTEIN 24 319 IPR045272 GO:0004714|GO:0006468
Stsc1989g00003 359 Gene3D Phosphorylase Kinase; domain 1 8 125 - -
Stsc1989g00003 359 ProSitePatterns Protein kinases ATP-binding region signature. 46 78 IPR017441 GO:0005524
Stsc1989g00003 359 Pfam Protein tyrosine and serine/threonine kinase 44 309 IPR001245 GO:0004672|GO:0006468
Stsc1989g00003 359 SUPERFAMILY Protein kinase-like (PK-like) 18 308 IPR011009 -
Stsc1989g00003 359 Gene3D Transferase(Phosphotransferase) domain 1 126 336 - -
Stsc1989g00003 359 ProSiteProfiles Protein kinase domain profile. 40 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1989g00003 359 FunFam Receptor-like protein kinase ANXUR2 126 336 - -
Stsc1989g00003 359 SMART serkin_6 40 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1989g00003 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1989g00003 Stsc-Chr1989 8612 10301 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1989g00003 10 328 Receptor kinase-like Gene Family AT5G39000 41.742 5.67e-72 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Stsc1989g00003 PK_Tyr_Ser-Thr 3.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1989g00003 - - adu:107486591 402.134