Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1989g00001 ATGACTGTTCCCCCATCCCAAATGCCATGGGTTGGAGGACCTTCGGCTGCTCAATTCCATGCATATGATGAGTTCCCAAGTCATCGGAATTTCAGAGGCGGGGGCCGAAGTCGAGGAAGAGGCCGTGGTTTTTCACATCGGTATTTCCGTGGACGTGTACGTTCTCATTCTCGAAATGCAAAATCGACTTCAAAGATTGAAGTTAAACCTTCTGAAAATAAAGATAAGGGGGCATTTTGTTACTCGAAAATAAGATCACTTCGAAAAGTGGATTTCGAAATTCATGGATCGATTCGGAGGACAAGCTACATAGGAGTGGGGGAGAATGATGATGTACAAACTTTCTACTACTTCATTGAGTCAGAGAACAATCCAAGGGGGGATCCTCTCGTGCTATGGCTCACTGGTGGTCCTGGCTGCTCTTCTTTGAGTGGCCTTATCTATGAAATAGGGCCGATTGCATTTCAAATTGATGGATATAATGGAGGACTCCCTACTTTGGTGTATAGACCATACTCATGGACTAAGGCAAGTAGCATTGTATTTGTAGATATTCCTGTTAATGCTGGCTTTTCATATGCTACAACAGAATTTGCTTCTCATCGGAGCGACTGGTTTTCATGGTTAATGGATCATCCAGAATTTCTCACAAACAAACTTTACATTGCCGGTGATTCATACTCTGGTAAACTTGTTCCTGTAATTGCTGACGAAATTTCAAAAGGAAATGAACAAGGCCTCCAACCATGGATAAATCTCCAGGGATACCTGATGGGGAACCCTAAAGTAGATCAAAATTCAGCAAACTATCGAATCCCATTTGCTCATGGGATGGGACTCATTTCTGATGAACTATACCAGATGACATCAGATATTTTTATAGAACACATTCTGGAGCCAGCATGTGAAGACTACTCATCACATAAGCCATTGGAATCTTGTCGGAGGAGATCAGTAGCAGAGAACTATCCTTGGAAGTTCAATGATACTCGTCCCAGATTACAATTGAGGAAATGTCCGTACGATAAATATCTCCTTAGTGACTATTGGGCCAACGATGACAAAGTCCGCAATGCGCTTAATGTGCGGAAGGGAACTAAAGAGATATGGAAACGTTGCACCAAAGATTTGCCTTACAAGGAAGATATCCCTAGCAGCATTCCATATCAACTAAATCTCAGCAAGAAAGGCTATCGTTCACTCATTTACAGTGGAGATCATGACATGCTTATTCCTTACTTGTCAACTCAAGCTTCCATAAGATCGTTAAACTACTCCATTGTCGATGATTGGAGGCCATGGTATACTGATGGCCAAGTTGCAGGATACACAAGAACTTACTCCAGTGCAATGACATTTGCAACTGTAAAGGGTGCAGGCCACATAGCACCAGAGTACAAGCCTCAAGAATGCTTCCACATGTACACAAGTTGGATTTCTCATATGCCTTTTTAG 1455 0.4241 MTVPPSQMPWVGGPSAAQFHAYDEFPSHRNFRGGGRSRGRGRGFSHRYFRGRVRSHSRNAKSTSKIEVKPSENKDKGAFCYSKIRSLRKVDFEIHGSIRRTSYIGVGENDDVQTFYYFIESENNPRGDPLVLWLTGGPGCSSLSGLIYEIGPIAFQIDGYNGGLPTLVYRPYSWTKASSIVFVDIPVNAGFSYATTEFASHRSDWFSWLMDHPEFLTNKLYIAGDSYSGKLVPVIADEISKGNEQGLQPWINLQGYLMGNPKVDQNSANYRIPFAHGMGLISDELYQMTSDIFIEHILEPACEDYSSHKPLESCRRRSVAENYPWKFNDTRPRLQLRKCPYDKYLLSDYWANDDKVRNALNVRKGTKEIWKRCTKDLPYKEDIPSSIPYQLNLSKKGYRSLIYSGDHDMLIPYLSTQASIRSLNYSIVDDWRPWYTDGQVAGYTRTYSSAMTFATVKGAGHIAPEYKPQECFHMYTSWISHMPF 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1989g00001 484 Gene3D alpha/beta hydrolase 75 483 IPR029058 -
Stsc1989g00001 484 SUPERFAMILY alpha/beta-Hydrolases 101 483 IPR029058 -
Stsc1989g00001 484 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 102 468 IPR001563 GO:0004185|GO:0006508
Stsc1989g00001 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 183 193 IPR001563 GO:0004185|GO:0006508
Stsc1989g00001 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 182 IPR001563 GO:0004185|GO:0006508
Stsc1989g00001 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 208 233 IPR001563 GO:0004185|GO:0006508
Stsc1989g00001 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 451 464 IPR001563 GO:0004185|GO:0006508
Stsc1989g00001 484 FunFam Carboxypeptidase 386 481 - -
Stsc1989g00001 484 Pfam Serine carboxypeptidase 101 480 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1989g00001 Stsc-Chr1989 55 3110 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1989g00001 346 484 Calmodulin-binding Proteins AT2G22960 58.993 1.66e-54 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1989g00001 K16296 - gmx:100792006 506.138