Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc197g00004 ATGTATAGGCTTCACTCTCAAATCCACCAGAGCAATGGTGCTCCTGTTCTTTCTCCATATTCTCCTTCTTCTTCTTCTTATAGTTCTTCTAATTCAGCTTCTTCATCCTCAGATTCTTCCACTGGGAATAGTAGAATAAGCCCTGCTATTATTTTCATAATAGTAATTTTATCAGTCGTGTTCTTCATCTTGGGAACCCTCCACCTGCTTGTTAGATTTCTCATGAGGCAGAGATCTTCTTCTTCCTCATCAGTTTCTCAATCCAATAGATACCCTGATATGTCTGAATCTGATGCATACCAGAGACAGTTGCAGCAACTCTTCCACCTCCATGACTCAGGTTTAGAGCAGGCTTTCATTGATGCACTCCCTGTGTTCCTCTACAAGGAGATAATTGGCTTGAAGGAGCCATTTGATTGTGCTGTTTGCCTCTGTCCGTGTTATGAGGAAGAAGATGGGGTTTCAGTTTCAGGATTTGGTGTCAATGGTGCTGGTTCTTCTAACAAGCCTGCAGAGAATCACATAACAAATGGTAAGAGGGTTTTCTCTGTGAGGCTTGGAAAATTCAGAAGCTCAAATAATAATGGAGTAGATGGTGCTGACAAATGTGAAGGAGAGAGCAGTAACAGTAGCATTAGTATTAGTAATAGCAATGCTAATTTGGATGCAAGAAGATGCTATTCAATGGGGTCTTACCAATATGTTGTTGCTGATTCAGATTTGAGAGTGGCTTTGTGTCCAAGCATCAGTGGCAGTATGAGACAATTGATTAAGGGAAAAATAGCTACAACAAATGGGAACAATTTTTCTTCAACTGATGTTGATGCTGTTGAAGGCAAAAAAATCAGCAATGCAAGAAAAGGTGAGAGCTTTTCTGTTTCCAAGATATGGCAATGGTCTAGGAAGGATAATAACAGGCAGGCCGTTTCTAGCATCGGTTTCTTCTACATCCATAGAAATACCTATTCACGTCCTCTTGCTACTGGCCCTTCTAATTCATTCACAACATCAACCATGCCTTCTCTCAAAGATGAGTGGAAGGAGCACCTTCTGGAGGTTGATGGCGACGTACACGACCACCCCAAAATGGAGGTACGCAATCTCCGGAGAGTCTCCGATGCCGGAGTCCCTATCCTGAAGGGTATCAGCCTGGAGATCCCAAAGGGTGTCATAGTCGGAGTCATAGGCCCCAGCGGCAGCGGAAAGTCAACGCTCCTCAGATCACTCAACCGTCTCTGGGAGCCTCCTTCCTCCTCCGTCTTTCTTGATTCCCAAGACATCACCCAACTCGACGTCCTCTCCCTCCGTCGCAAAGTCGGCATGCTATTTCAACTCCCAGCCCTATTCGAAGGCACCGTTGCGGATAACATCCGCTACGGGCCTCACCTGGCGGGGAAGAAGCTTACAGACGACGAGGTCTGTAAGCTTCTTTTGCTGGCCGACTTGGACGGGTCGTTCCTTCAAAAGTCGGCCAGCGAACTCTCTGTGGGTCAAGCACAGAGGGTAGCATTAGCAAGAACACTTGCTAATTCCCCTGAGGTTTTGCTTCTTGACGAGCCAACGAGCGCGTTGGATCCAATTTCCACGGAGAATATAGAAGCTGCGCTGGTGAAGCTGAACAAGAACAGTGGCATGACGATGATTATGGTGTCTCATAGCATTAAACAGATACAGAGGATTGCTCACATGGTTTGCCTCCTTGTTGATGGTGAGATTGTTGAGGTTCTTGATCCTCAACAACTCTCACAAGCCAACCATCCCATGGCTCGGAGGTTTCTTGAACTCACTAATTAA 1794 0.4565 MYRLHSQIHQSNGAPVLSPYSPSSSSYSSSNSASSSSDSSTGNSRISPAIIFIIVILSVVFFILGTLHLLVRFLMRQRSSSSSSVSQSNRYPDMSESDAYQRQLQQLFHLHDSGLEQAFIDALPVFLYKEIIGLKEPFDCAVCLCPCYEEEDGVSVSGFGVNGAGSSNKPAENHITNGKRVFSVRLGKFRSSNNNGVDGADKCEGESSNSSISISNSNANLDARRCYSMGSYQYVVADSDLRVALCPSISGSMRQLIKGKIATTNGNNFSSTDVDAVEGKKISNARKGESFSVSKIWQWSRKDNNRQAVSSIGFFYIHRNTYSRPLATGPSNSFTTSTMPSLKDEWKEHLLEVDGDVHDHPKMEVRNLRRVSDAGVPILKGISLEIPKGVIVGVIGPSGSGKSTLLRSLNRLWEPPSSSVFLDSQDITQLDVLSLRRKVGMLFQLPALFEGTVADNIRYGPHLAGKKLTDDEVCKLLLLADLDGSFLQKSASELSVGQAQRVALARTLANSPEVLLLDEPTSALDPISTENIEAALVKLNKNSGMTMIMVSHSIKQIQRIAHMVCLLVDGEIVEVLDPQQLSQANHPMARRFLELTN 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc197g00004 597 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 342 595 IPR005670 GO:0005315|GO:0016020|GO:0035435
Stsc197g00004 597 MobiDBLite consensus disorder prediction 1 20 - -
Stsc197g00004 597 SMART AAA_5 388 574 IPR003593 GO:0016887
Stsc197g00004 597 FunFam ABC transporter, ATP-binding protein 360 592 - -
Stsc197g00004 597 CDD ABC_PstB_phosphate_transporter 363 581 IPR005670 GO:0005315|GO:0016020|GO:0035435
Stsc197g00004 597 Pfam ABC transporter 379 522 IPR003439 GO:0005524
Stsc197g00004 597 Gene3D - 361 596 IPR027417 -
Stsc197g00004 597 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 594 IPR003439 GO:0005524
Stsc197g00004 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 584 IPR027417 -
Stsc197g00004 597 ProSitePatterns ABC transporters family signature. 494 508 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc197g00004 Stsc-Chr197 56462 60575 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc197g00004 376 587 Calmodulin-binding Proteins AT2G36910 33.333 7.01e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc197g00004 K02068 - gmx:100791365 383.259