Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc197g00001 ATGCCTTTGATGTCTAATGTCTTCAGCTTAAACCGCAAGACTATGACTCTGAGGGCGGCGCAGCCTTCGTTCGGCGGTTTATGGCGGCTGATCTCGAGCCGTTCTGCTTTTCCGCCGTCGGCTACTGCCGCAGCGTTTGCTCGACAGGCGTTTGTCCTCTTCTCATCTCTAACTAGGGTGATGATCGATAGAACAGGTTGTTCTAAAGAGTACGGTTTTGTTCAATATGCCACTACAGAAGAGGCTGCAAAGGGCATCGAAAACACGAATGGAAAGTTTTTGGATGGTTGGGTTATATTTGTAGAGTATGCCAAATCTATCTCAGAACCCACACAGCAATGTCGCCGGCATCTCTTGCAGTAG 363 0.4876 MPLMSNVFSLNRKTMTLRAAQPSFGGLWRLISSRSAFPPSATAAAFARQAFVLFSSLTRVMIDRTGCSKEYGFVQYATTEEAAKGIENTNGKFLDGWVIFVEYAKSISEPTQQCRRHLLQ 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc197g00001 120 SUPERFAMILY RNA-binding domain, RBD 59 113 IPR035979 GO:0003676
Stsc197g00001 120 Gene3D - 35 119 IPR012677 -
Stsc197g00001 120 PANTHER NUCLEOLAR PROTEIN 8 59 108 - -
Stsc197g00001 120 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 106 IPR000504 GO:0003723
Stsc197g00001 120 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 96 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc197g00001 Stsc-Chr197 4603 6874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc197g00001 59 101 Eukaryotic Initiation Factors Gene Family AT4G34110 48.837 9.95e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc197g00001 - - adu:107488830 109.383