Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1972g00001 ATGGTGAAGGTGTACAACTTGTTTCTTGTGTTGTGTTTGGTCGCCGTAGTACCAACCTCACAAGCGGAGTTCGTAGAGAATGCTACATTTGTGAAACAAATCGTAACTGGTGATAATAAATATTGGAATGAAAGGGCTGAAATTGCTAGAAAGCTTAGCGAAGAAACATATTTTCCTGATCCACATGAGCTTGCTGGCAACTTCTCCGCTACTGTTATGGAAGATCTGGATGGTAGCAAGCATATAAGAAGGAACTTGAACGGTCAAAGAAAGGATGGACTTCCATGTGAGGCAACCAATCCCATTGACAGATGCTGGAGGTGTGACCCTGATTGGGAAAGCAACCGCCAAAAGCTT 357 0.4342 MVKVYNLFLVLCLVAVVPTSQAEFVENATFVKQIVTGDNKYWNERAEIARKLSEETYFPDPHELAGNFSATVMEDLDGSKHIRRNLNGQRKDGLPCEATNPIDRCWRCDPDWESNRQKL 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1972g00001 119 Pfam Pectate lyase, N terminus 40 86 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1972g00001 Stsc-Chr1972 11 846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1972g00001 1 119 Polysaccharide Lyase AT5G15110 28.667 6.43e-17 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1972g00001 K01728 - gmx:100798579 111.694