Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc196g00007 ATGGATTCAGAGAATGTCACAGGCTCTGTAGAATCAAATGGAGAAGGTGCTTCGGGGGATGAATTGGAATCTCAGTCTTTGGAGGGGTCCCTTGATGTGGCCTCTGAGGAGGTTGGGAAAGGTGAGGGATGCTACAGGCAAGGTGGGAATGGTGCGGTGCAGGATGTAATGGAACCAGCTACCCACACCTTGGAGGAGGTGATGAACATGGAATTTGAGAATCCCGAAGCAGCTATACGTTTTTATGAACAGTACAGTAGAGCCAGGGGTTTTTCAATGAGGCATGGAAGGAAGCTCAAGAATAAGAATGATGAAATTGTGCGATATACTTTTCTGTGTAATAGAGAGGGTTTTAGAAGCAGGAAATGGCTGGAGATGCTTGATCGGAAGAGGGGGCACAAGGCGGTGACTAGGTGTGGTTGTAGGGCTGAGCTGCGCATAAAGCCCAAGGGGCGTACAGGGCGGTGGCTTGTGTCTCGATTTCTGGATGAACACAACCACGAGCTACTTCCGGCGAAGTTTGTGGAGCATCTGCCACCTTGTCAAAATATTTCTGATGTTGACGTTGAACATATGGACTGCCCGAGGGAAGTGGGGAACATGCACAACGTTGTTCGGCAACTGGGAATGTCACATAATGCCGATGTGAATGCGACGCTGAGGTTCTTTGAGTTGTGTGCAAAGTCCGATGAGAAGATGTATTGGAGGTACCAGGTTAGTTCTGATCAGCACCTATGTGATTTGTTCTGGAGTGATGGGCGTAGCCAAGAGGACTATAGCTTATTCGGTGATGTTCTGGCGTTTGATGCGACTTATGGCCGCAACAAGTACAATATGCCTGTGATAGTGTTTTCTGGGGTGAATCATCACAACGAGACATGTGTATTTGGGACAGCAATGGTATCGTGCGAGTCACAAGCTTCTTATGTGTGGGTGCTCAGGCAGTTCCTAAATTGTATGAGGGGCAAATCTCCGAGGGCAGTAATAACTGATGGTGATAGATCGATGAGGCTTGCTATTCAGGAAGTGTTTCCAGAAGCTCACCACCGTCTTTGTTCTTGGCACCTCCTGAAGAATGCAACAGAGAATATTTGCAAGCCGCGCTTCACAACCTTGCTAAAAGATTGTATGCTAGCCGACATAGAGGTGGAAGAGTTCGAAAAGCAATGGGAGGCAATGGTTGATGAGTGCGGGGTCAGGGAAGTGGAGTGGGTGAAGGATTTGTATGAGAAGAAATCGTTATGGGCTACTGCTTACATTCGGGGTTGCTTTTATGCAGGACTGCGGACAACCTCGCGGTGTGAGTCGTTGCATGCGAAACTCGGGCGATTTGTTGAGAAGAGGTACGGAATACTTGAGTTTGTAAAAAAATTCCAGCAATGTGTGGATTTTTTAAGAGACAAAGAGGATGAGCTTGATTTTGGATCATATCATGGGACGCCCGTGTTACAGACTGAGTTCCCTGAACTGGAAAAGTCTGGGGCTGCGGAATTTACTAGAGAAATTTTCCTTCAGTTCCAGGAAACATTGAAACGAAGTGTGAGGATAACTGTATTAGAGTGCCATGGAGCAGATGAAATAGACGTTTATGTGACCCAAAAATATAGGAGGCCTGAAATGAGATGGAGCGTGGAGCATCATAAGGAAAGCAACTGCTTTCGGTGTAGCTGCTTGAGGATGGAGTCATTTGGCCTTCCTTGTGACCATATACTTGCTGTCCTTGTGCGCCTAGACATGTGCTCTCTCCCTAAGTCCCTTATCCTTCAGAGGTGGTCGAAGAATGCGAAGATCGACATCCTCCTAGGTGGAGGTATATGTGGGAATGACGAAGGGGAAACGAGTCATGTTTATAAGAGCCGAGTTTGCGAATTTCTACAGTTGTGCAAGAGGCTTGCGAGAGTTGCTTGCAAGAATGAGAACGATTTTAAGAATTGCTCAGCTAAGGTTGTGGAAGAGATTAAGTTGTTGGAGGTTAGGAACGAGGCAGCAGCTGATGGTGGCTGCAATGTGGAGCAGGTCAATGAGGGTCCTATCGGTGTCCGAACCAAAGGAATCGGTCGTGGGAATGAACCGGCAGTGTCTAGGGGTGTGAAGAGGCATAAATGTAGTACATGCGGTGAGCTTGGGCACTGCCGAACAACATGTCCTAACGGAACCCAATTGCCAGCCAAGAGTAGNNNNNNNNNNTAG 2190 0.4735 MDSENVTGSVESNGEGASGDELESQSLEGSLDVASEEVGKGEGCYRQGGNGAVQDVMEPATHTLEEVMNMEFENPEAAIRFYEQYSRARGFSMRHGRKLKNKNDEIVRYTFLCNREGFRSRKWLEMLDRKRGHKAVTRCGCRAELRIKPKGRTGRWLVSRFLDEHNHELLPAKFVEHLPPCQNISDVDVEHMDCPREVGNMHNVVRQLGMSHNADVNATLRFFELCAKSDEKMYWRYQVSSDQHLCDLFWSDGRSQEDYSLFGDVLAFDATYGRNKYNMPVIVFSGVNHHNETCVFGTAMVSCESQASYVWVLRQFLNCMRGKSPRAVITDGDRSMRLAIQEVFPEAHHRLCSWHLLKNATENICKPRFTTLLKDCMLADIEVEEFEKQWEAMVDECGVREVEWVKDLYEKKSLWATAYIRGCFYAGLRTTSRCESLHAKLGRFVEKRYGILEFVKKFQQCVDFLRDKEDELDFGSYHGTPVLQTEFPELEKSGAAEFTREIFLQFQETLKRSVRITVLECHGADEIDVYVTQKYRRPEMRWSVEHHKESNCFRCSCLRMESFGLPCDHILAVLVRLDMCSLPKSLILQRWSKNAKIDILLGGGICGNDEGETSHVYKSRVCEFLQLCKRLARVACKNENDFKNCSAKVVEEIKLLEVRNEAAADGGCNVEQVNEGPIGVRTKGIGRGNEPAVSRGVKRHKCSTCGELGHCRTTCPNGTQLPAKSXXXX 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc196g00007 729 Pfam FAR1 DNA-binding domain 80 171 IPR004330 -
Stsc196g00007 729 MobiDBLite consensus disorder prediction 1 31 - -
Stsc196g00007 729 MobiDBLite consensus disorder prediction 1 33 - -
Stsc196g00007 729 Pfam MULE transposase domain 265 359 IPR018289 -
Stsc196g00007 729 ProSiteProfiles Zinc finger CCHC-type profile. 701 717 IPR001878 GO:0003676|GO:0008270
Stsc196g00007 729 ProSiteProfiles Zinc finger SWIM-type profile. 540 578 IPR007527 GO:0008270
Stsc196g00007 729 Pfam SWIM zinc finger 554 575 IPR007527 GO:0008270
Stsc196g00007 729 SUPERFAMILY Retrovirus zinc finger-like domains 694 720 IPR036875 GO:0003676|GO:0008270
Stsc196g00007 729 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 58 643 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc196g00007 Stsc-Chr196 46298 49457 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc196g00007 MULE 3.3e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc196g00007 - - adu:110274973 823.928