Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc196g00002 ATGGCGGCGATGAAGCCACAGCCTCTGCAGGCGCGTCCCTTCGAGGGAGAGGATGTCATACTGCTCGACGAGGACGACGTCGTTGAGTGTGAGGATGGTGATGGTGGTTGCGATGATGCTATGCAAGAGCTCGAGGAAGGGAATACGAATTCGGTTGGCGTTGGCGCGCGTTCTAATCACGCGGCAGTTGCTAAGCCTTCGCGGAGGAGTGAGCTCACTCTTTCTTTCGAGGGTGAAGTTTATGTATTCCCTGCTGTCACACCTCACAAGGTGCAAGCCGTTTTGCTCCTTTTAGGAGGATGTGATGTGCCGACAGTAGTGCCCGCAGTTGAAGTACCACTTGATCAAAGTAACAGGAGCATGGATGACACACCAAAGCAGTCAAACCTTTCTAGAAGAATAGCCTCTTTGGTCAGGTTCCGTGAGAAACGCAAGGAAAGATGTTTTGACAAGAAAATTAGGTACACCGTGAGAAAAGAAGTGGCACAGAGGATGCATAGAAAGAATGGGCAGTTTGCATCCTTGAAGGAAAGCCCAGGTTCATCTAACTGGGATTCGGCAGAGGGTCCCCCTCAAGATGGAACTAATTCTGAAACAGTGCGTAGATGTCAACATTGTGGTGTGAGTGAAAATAATACACCTGCAATGCGTCGGGGGCCAGCAGGATCTAGGACTTTATGTAATGCATGTGGGCTTATGTGGGCTAACAAGGGTACACTGAGGGATCTCAGTAAGAGTGGAAGAAATGTCTCTGTTGAACAAAGCGATCCAGTGCGTGTAAGATCAGAGACTCCTCTCGATGTCAAGCCCACTATTGCGGAAGGGGATTTGCCTGACATCCATGATGAACATGAAATCTCTGAAAATCCTTCCAAGGCTACTGCAACTGAAGGTTCTAGTAATGATGCTGTAAACCTTGGTGATGAGGAATTGCCTGAATCTGCAGAAGACTTCACAGAAGCTCTGCCTATGGGAATTGATCATTCTTCAGAAAATGAGGATGAGCAGGATCCTCTGGTTGATCTTTCTAATCCTTCAGATTCTGATATCGACATTCCGGGAAACTTTGAATAG 1074 0.4786 MAAMKPQPLQARPFEGEDVILLDEDDVVECEDGDGGCDDAMQELEEGNTNSVGVGARSNHAAVAKPSRRSELTLSFEGEVYVFPAVTPHKVQAVLLLLGGCDVPTVVPAVEVPLDQSNRSMDDTPKQSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESPGSSNWDSAEGPPQDGTNSETVRRCQHCGVSENNTPAMRRGPAGSRTLCNACGLMWANKGTLRDLSKSGRNVSVEQSDPVRVRSETPLDVKPTIAEGDLPDIHDEHEISENPSKATATEGSSNDAVNLGDEELPESAEDFTEALPMGIDHSSENEDEQDPLVDLSNPSDSDIDIPGNFE 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc196g00002 357 MobiDBLite consensus disorder prediction 274 290 - -
Stsc196g00002 357 Pfam GATA zinc finger 203 239 IPR000679 GO:0006355|GO:0043565
Stsc196g00002 357 ProSitePatterns GATA-type zinc finger domain. 203 230 IPR000679 GO:0006355|GO:0043565
Stsc196g00002 357 PANTHER GATA TRANSCRIPTION FACTOR 28 20 350 IPR045280 GO:0006355
Stsc196g00002 357 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 248 - -
Stsc196g00002 357 Gene3D - 194 255 IPR013088 GO:0006355|GO:0008270
Stsc196g00002 357 MobiDBLite consensus disorder prediction 174 201 - -
Stsc196g00002 357 ProSiteProfiles GATA-type zinc finger domain profile. 197 253 IPR000679 GO:0006355|GO:0043565
Stsc196g00002 357 ProSiteProfiles CCT domain profile. 133 175 IPR010402 GO:0005515
Stsc196g00002 357 CDD ZnF_GATA 202 245 IPR000679 GO:0006355|GO:0043565
Stsc196g00002 357 MobiDBLite consensus disorder prediction 166 201 - -
Stsc196g00002 357 MobiDBLite consensus disorder prediction 244 258 - -
Stsc196g00002 357 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Stsc196g00002 357 Pfam CCT motif 133 174 IPR010402 GO:0005515
Stsc196g00002 357 SMART tify_2 65 100 IPR010399 -
Stsc196g00002 357 SMART GATA_3 197 250 IPR000679 GO:0006355|GO:0043565
Stsc196g00002 357 MobiDBLite consensus disorder prediction 244 357 - -
Stsc196g00002 357 Pfam tify domain 67 99 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc196g00002 Stsc-Chr196 18175 24022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc196g00002 71 246 Tify Gene Family AT1G51600 57.297 6.51e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc196g00002 CCT 1.4e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc196g00002 - - gmx:100784257 491.886