Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1966g00001 ATGGAAAGGAGAAGCTTATTTTGTACCTTGAGAATTGATGATGAAGCTGATGAGAAGCTAAGTTGGAGTCGGACGGTGAATGTCATTACCGGAACGGCTAATAATGCTTTGGTTTACATGCATCATGATTGTTACCCACCAATAGTTCACAGAGATGTAACGAGTAGCAACATTTTATTAAACTTGGAGTTGCATGCCATTGTCTCAGACTGTGGCACATATAGATACCTTGCACCAG 238 0.4076 MERRSLFCTLRIDDEADEKLSWSRTVNVITGTANNALVYMHHDCYPPIVHRDVTSSNILLNLELHAIVSDCGTYRYLAP 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1966g00001 79 ProSiteProfiles Protein kinase domain profile. 1 79 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1966g00001 79 PANTHER LEUCINE RICH REPEAT KINASE 2 1 78 - -
Stsc1966g00001 79 ProSitePatterns Tyrosine protein kinases specific active-site signature. 48 60 IPR008266 GO:0004672|GO:0006468
Stsc1966g00001 79 Pfam Protein tyrosine and serine/threonine kinase 15 76 IPR001245 GO:0004672|GO:0006468
Stsc1966g00001 79 SUPERFAMILY Protein kinase-like (PK-like) 2 77 IPR011009 -
Stsc1966g00001 79 Gene3D Transferase(Phosphotransferase) domain 1 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1966g00001 Stsc-Chr1966 8504 8741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1966g00001 1 79 Receptor kinase-like Gene Family AT4G08850 53.165 1.93e-19 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc1966g00001 PK_Tyr_Ser-Thr 3.3e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1966g00001 - - zju:107415530 98.2117