Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1960g00001 ATGGCCGAATGCAAAGCTCTAGGAAAGATCAAGCACAGAAATCTTCTCAGCATACTGACTTGTTGTTCAAGTATTGATTACAAAGGGAACGATTTCAAGGCCATAGTGTTCGAGTTCATGCCTAAGGGGAGTCTAGAAACCTTGTTGCACAACACTATTGAAGATGGAGAATCCAGAAATCCAAGTCTCAACCTTATTCAAAGAGTAAATATTGCTCTTGATGTAGCTTTTGCATTGGATTATCTTCAGAATGATTCAGGGGAAGCTATAGTTCATTGCGATATAAAGCCAAGTAATATTCTACTTGATGATGACATGGTTGCCCACTTGGGAGACTTTGGATTAGCTACACTCATTCATGGTGCTGCAAGCCATTCTAGCAGTGGTCAAGCAAGCTCCTCTGCAATTAAGGGAACCATTGGATATATTCCACCAGAGTATGGAGCGGGTGGTTCTGTGTCAGCAGAAGGAGACATGTATAGCTATGGAATTCTTCTTTTGGAGATGCTCACTGGAAAGAAGCCAACTGATAACATGTTCGGTGAAGGTTTAAGCCTGCACAAGTTTTGTAAGATGGCAATTCCTGAAGGAATCACAGATGTTGTTGATTCACAATTGCTAATTCCATTTGATGAAGGAGAAAGGAGAATCACACAACAGCAAAATGTGGAAGACGCCATTCGAGAGTGTCTTGTGTTGTTTGCTAGCATTGGAATTGCATGTTCTGAAGAATCTCCCTCTCAAAGATTGGGCATAAAAGATGTGATAATGGAGTTACATGCAATTAAACAGAAGCAGCTTTCATAA 807 0.4064 MAECKALGKIKHRNLLSILTCCSSIDYKGNDFKAIVFEFMPKGSLETLLHNTIEDGESRNPSLNLIQRVNIALDVAFALDYLQNDSGEAIVHCDIKPSNILLDDDMVAHLGDFGLATLIHGAASHSSSGQASSSAIKGTIGYIPPEYGAGGSVSAEGDMYSYGILLLEMLTGKKPTDNMFGEGLSLHKFCKMAIPEGITDVVDSQLLIPFDEGERRITQQQNVEDAIRECLVLFASIGIACSEESPSQRLGIKDVIMELHAIKQKQLS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1960g00001 268 Gene3D Transferase(Phosphotransferase) domain 1 40 268 - -
Stsc1960g00001 268 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 40 268 - -
Stsc1960g00001 268 ProSiteProfiles Protein kinase domain profile. 1 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1960g00001 268 SMART serkin_6 1 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1960g00001 268 ProSitePatterns Serine/Threonine protein kinases active-site signature. 90 102 IPR008271 GO:0004672|GO:0006468
Stsc1960g00001 268 Pfam Protein kinase domain 2 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1960g00001 268 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 264 - -
Stsc1960g00001 268 SUPERFAMILY Protein kinase-like (PK-like) 2 259 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1960g00001 Stsc-Chr1960 1346 2423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1960g00001 1 265 Receptor kinase-like Gene Family AT3G47570 48.120 2.78e-80 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc1960g00001 Pkinase 8.7e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1960g00001 - - ahf:112766492 429.483