Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1951g00002 ATGTCCAACTTCCTTAAATCCCTCACCGGAGCCCCTTCCGACTGGTCCACCACCACCTCGCACTGCAAGTGGTCCGGCATCACCTGCGACAGCTCCAACAGCGTAACCTCCATCAAGCTCTCCAAGAACTCCGTCTCGGGAGCCCTCCCTTCCGATCTCAACACCCTCACGCAACTAACAACTCTCTCCCTCGCTTCAAACGCTCTCACCGGCGCGTTGCCCTCACTCGCCAACCTCACCATGCTCCAAAACGTAGTCCTAGACCAAAACAACTTCACCTCAGTCACCAAAGGCGCCTTCTCGGGACTCACGAGCCTCCAGAATCTCTGGCTCAACAACCAGAACGACGGCGCAGGTTTTACCGGCACCGTCGATGTACTCGCTTCAATGACGCACTTGAATCAGGTATGGCTTCAGAAAAATCAGTTCACCGGTCCCATTCCGGATTTGTCAAACTGCACCGGTTTGTTCGATTTGCAGCTTCGCGATAACCAGTTAACCGGCGTTTTACCGGTTGCTCTGACCACAATGTCGAGTTTGAAGAACATTTCTTTGGACAATAACAGACTCCAGGGTCCCACTCCGGCGTTCAAGGGTGTGACGGTTACGCTTACCGGGCTCAACAGGTTTTGCGCCAAAGCTGGAGAGTCTTGTGATGATAGAGTGAACACCCTTCTTGCGGTTGCGGCCGGGTTCGGGTACCCGTACCGGTTGGCGGACTCGTGGGATGGGGATAATCCTTGCAATGATTGGACATCTGTTGTGTGTGCTAGTGGGAAGATAGTAACCTTGAATTTCAAGAATCTTGATTTGAATGGGACGATCTCGCCGGCTTTCGCCAACTTAACGGATTTGAGGAACTTGTATCTGAATGGCAACAATTTGACTGGGACAATACCGGATAGCTTGACGAGTTTGGCTCAGCTTGAGGTTCTGGATGTTTCTAATAACAATTTGACAGGGAAGATTCCGAGTTTCCCTTCTAAGGTGAAGTTCAGCTACGGTGGCAATGCTTTGCTTGGGGTTTCTGGTGGAGGTGGAGGGAGTGGGAATAGCTCATCTTCAAGTTCTGGTGATGCACCGAGTGGAAGTCCTTCTAAAGCATCGAATGGTACTTCGCTTTCGCCTGGTTTGATCGCAGGTATAGCCATCATTTCAATGTTTTTTGTTGCGGTTGTATTGTTTGTGTTTTGCAAGTGTTATGCCAAGAACAGGAGTAGGAAATTCGGAAGGGTTAGTAACCCTGAAACAGGGAAAGGTGAAGTTAAGATTGATACGGTGAATACTTCAAATGCCAATGGATTTGGTGGAGGAGGGGGAGCGGCGAGCGGGTTGCAAAGCCAGGGTAGCGAGCCAAGCGAACAGCTCCCTGTTTTTGAAGGTGGGAATGTCACAATTTCAATCCAAGTTCTTAGGCAGGTCACAAATAATTTCAGTGAGGATAACATTTTGGGAAGGGGAGGGTTTGGTGTTGTGTATAAAGGGGAATTGCACGATGGGACTAAGATTGCGGTGAAGAGAATGGAATCGGTTGCAATGGGAACAAAAGGAATGAACGAGTTCCAAGCAGAGATTGCAGTTCTGAGTAAAGTTAGGCATAGGCATTTGGTTGCTCTTTTAGGATATTGCATGAATGGCAATGAAAGACTTCTTGTGTATGAGTACATGCCTCAAGGAACACTAACGCAGCATCTGTTCGATTGGAATGAGAATGGTTGCGCTCCTTTGACATGGAAACAAAGGGTGGCAATTGCCTTAGATGTAGCAAGGGGAGTGGAGTACTTGCACAGCTTGGCTCAGCAAAGCTTCATTCATAGAGACTTGAAACCCTCAAACATTCTCTTGGGCGATGACATGAGAGCTAAGGTTGCTGATTTTGGTTTGGTTAAAAATGCACCGGATGGAAAGTACTCAGTTGAGACGCGGTTAGCTGGGACTTTCGGATATCTTGCACCCGAATATGCAGCTACTGGAAGAGTGACAACAAAAGTCGATGTCTACGCATTTGGGGTAGTTTTGATGGAACTCATTACAGGCAGAAGGGCCTTGGATGATACCGTGCCGGATGATCGGTCACACCTTGTTTCATGGTTCCGCAGGATACAAATTAACAAGGAGAACATCCCAAAGGCAATTGATCAAACTCTTGATCCCGACGAAGAAACCATGGAGAGCATTTATAAGGTGGCCGAGCTTGCAGGCCATTGCACGGCTCGCGAGCCGTACCAAAGGCCTGATATGGGGCATGCTGTGAATGTTTTGGTCCCTCTTGTAGAGCAATGGAAGCCTACAAACCATGAAGAAGAAGAAGGTTATGGCATTGATCTCCACATGAGCCTTCCTCAAGCTCTAAGAAGGTGGCAAGCCAATGAAGGTACTTCCACCATGTTCAATGACATGTCATTTTCCTCGCAAACGCAGTCGAGCATTCCGGCGAAACCTTCCGGGTTTGCTGACTCTTTCCATTCAATGGATTGCCGGTGA 2484 0.4859 MSNFLKSLTGAPSDWSTTTSHCKWSGITCDSSNSVTSIKLSKNSVSGALPSDLNTLTQLTTLSLASNALTGALPSLANLTMLQNVVLDQNNFTSVTKGAFSGLTSLQNLWLNNQNDGAGFTGTVDVLASMTHLNQVWLQKNQFTGPIPDLSNCTGLFDLQLRDNQLTGVLPVALTTMSSLKNISLDNNRLQGPTPAFKGVTVTLTGLNRFCAKAGESCDDRVNTLLAVAAGFGYPYRLADSWDGDNPCNDWTSVVCASGKIVTLNFKNLDLNGTISPAFANLTDLRNLYLNGNNLTGTIPDSLTSLAQLEVLDVSNNNLTGKIPSFPSKVKFSYGGNALLGVSGGGGGSGNSSSSSSGDAPSGSPSKASNGTSLSPGLIAGIAIISMFFVAVVLFVFCKCYAKNRSRKFGRVSNPETGKGEVKIDTVNTSNANGFGGGGGAASGLQSQGSEPSEQLPVFEGGNVTISIQVLRQVTNNFSEDNILGRGGFGVVYKGELHDGTKIAVKRMESVAMGTKGMNEFQAEIAVLSKVRHRHLVALLGYCMNGNERLLVYEYMPQGTLTQHLFDWNENGCAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTVPDDRSHLVSWFRRIQINKENIPKAIDQTLDPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTNHEEEEGYGIDLHMSLPQALRRWQANEGTSTMFNDMSFSSQTQSSIPAKPSGFADSFHSMDCR 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1951g00002 827 SMART LRR_typ_2 79 102 IPR003591 -
Stsc1951g00002 827 SMART LRR_typ_2 177 199 IPR003591 -
Stsc1951g00002 827 SMART LRR_typ_2 56 78 IPR003591 -
Stsc1951g00002 827 SMART LRR_typ_2 282 306 IPR003591 -
Stsc1951g00002 827 MobiDBLite consensus disorder prediction 346 371 - -
Stsc1951g00002 827 Pfam Leucine rich repeat N-terminal domain 220 256 IPR013210 -
Stsc1951g00002 827 Pfam Leucine rich repeat N-terminal domain 4 30 IPR013210 -
Stsc1951g00002 827 SUPERFAMILY L domain-like 13 323 - -
Stsc1951g00002 827 Gene3D Ribonuclease Inhibitor 219 343 IPR032675 -
Stsc1951g00002 827 ProSitePatterns Protein kinases ATP-binding region signature. 484 506 IPR017441 GO:0005524
Stsc1951g00002 827 FunFam receptor protein kinase TMK1 440 555 - -
Stsc1951g00002 827 MobiDBLite consensus disorder prediction 345 371 - -
Stsc1951g00002 827 PANTHER OSJNBA0070M12.3 PROTEIN 1 109 - -
Stsc1951g00002 827 Pfam Protein tyrosine and serine/threonine kinase 481 752 IPR001245 GO:0004672|GO:0006468
Stsc1951g00002 827 CDD STKc_IRAK 484 757 - -
Stsc1951g00002 827 FunFam receptor protein kinase TMK1 556 773 - -
Stsc1951g00002 827 ProSiteProfiles Protein kinase domain profile. 478 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1951g00002 827 Gene3D Ribonuclease Inhibitor 116 213 IPR032675 -
Stsc1951g00002 827 Gene3D Ribonuclease Inhibitor 2 115 IPR032675 -
Stsc1951g00002 827 FunFam Leucine-rich repeat receptor-like kinase 220 343 - -
Stsc1951g00002 827 SMART serkin_6 478 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1951g00002 827 SUPERFAMILY Protein kinase-like (PK-like) 454 763 IPR011009 -
Stsc1951g00002 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 603 615 IPR008271 GO:0004672|GO:0006468
Stsc1951g00002 827 Gene3D Transferase(Phosphotransferase) domain 1 556 777 - -
Stsc1951g00002 827 Gene3D Phosphorylase Kinase; domain 1 441 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1951g00002 Stsc-Chr1951 3116 6588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1951g00002 34 754 Receptor kinase-like Gene Family AT5G07280 32.148 2.91e-87 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Stsc1951g00002 PK_Tyr_Ser-Thr 3.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1951g00002 K00924 - gmx:100781851 1157.51