Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1946g00002 ATGATAACTGACGATGATATATTCGCCAGTTCTTCACCCTATGAGCCATTATCAATGTCCGCTGCCAATTGCATGGACGATTTGCTAGCAGCTATAGGCTACAATAAGGTGCAATCAAACGACGGCATGGCTCACGTGCCGCAGAAGCTTGACCATCAGCTCCAAACGACGGCGACGATGGCAAATAATGTCAATGCACAAGAAGGAACTTCTTTCTATAACGTCGCTTCAAACAACGCCGTCGTTCACTACAACTACCCCAACGATGTCTACACCTGGGACCAAACCATGCTCACCAACACCAACAACCAAAACGACACCACAATTACCAATTCGCTGCCGTTTACGCAAATTCCCGAGGACCCTTTACAGTTTCATATTCTCAACGGAAACTCAGCCACCGACCTTAGATCGGTTACCGAAACCGTTAAATCGCAAGTGGAGCCACACTCAGTCCACACGCGCCCTAGTGGAGTGACCGAAGATACTGGCGTGCGTCTGGTTCACGCGCTCATGGCGTGCGCGGAGGCGATCCAGGAAGGAAACCTTGACCTCGCTGACGTGTTCGTGCGCCACGCGTCGGTCCTCGCGTCTCAGCAGGGCGGTGCAATGAGGAAAGTCGCCACGAACTTCTCTCACGCGTTAGCGCGTCGAATTTACGGCGCGTATCCGAACGAGCCCACGAGCCCCTCTCTCTCAGACATGCTCCACGTCCACTTCTACGAGGCCTGCCCGTACCTCAAATTCGCGCACTTCACCGCCAACCAAGCGATTCTAGAAGCTTTCTCCAACGCAACCACCGTCCACGTCATCGATTTCGGCCTGAAGCAGGGGCTTCAGTGGCCAGCGCTCATGCAGGCACTGGCACTCCGTCCAGGTGGACCACCGGCTTTCCGGTTGACCGGAATCGGACCTCCTTCTCCTGGTAACAACACCGACACGCTTCAACAAGTCGGTTGGAAGCTTGCGCAGCTCGCGAGAACGATTCGAATTCGGTTCGAGTTCCGCGGATTCGCCTGTAACAGCCTCTCGGATCTTGATCCAACAGTTCTTGATATCAAACCGGGAGAATCCGTGGCGGTTAACGCCGTCTTCGAGCTTCACCGTTTGCTCGCCAAGCCCGGTTCGCTCGAGAGGGTTTTGAACACAGTTAAAAGAATCGAACCAGAGATGGTGACGGTGGTGGAGCAGGAAGCGAACCATAACGGTCCTGTGTTTCTTGAACGGTTCACGGAGGCGATGCATTATTACTCGAGTTTGTTTGATTCGATGGAAGGATCGGTTAATAATGAGGACGGGGCTCTCTCGGAGGTTTACTTAGGGAGGCAGATTTGCAACGTTGTGGCGTGCGAAGGAGAGGAGCGAGTGGAGCGGCATGAGACGCTGGCTCAGTGGAGAATTAGGATGGGTTCAGCCGGGTTCGAACCAGTTCGGCTCGGTTCAAACGCGTTTAGGCAGGCCAGGATGCTGTTGGCGCTGTTCGCCGGAGGAGAAGGGTATAGGGTGGAGGAGAATGACGGGTGTCTCTTGCTCGGTTGGCAAACGAGGCCACTCATTGCAACATCCGCGTGGAGAGTCGGCGGCGGCGCCCGCCGCTATTGA 1602 0.5474 MITDDDIFASSSPYEPLSMSAANCMDDLLAAIGYNKVQSNDGMAHVPQKLDHQLQTTATMANNVNAQEGTSFYNVASNNAVVHYNYPNDVYTWDQTMLTNTNNQNDTTITNSLPFTQIPEDPLQFHILNGNSATDLRSVTETVKSQVEPHSVHTRPSGVTEDTGVRLVHALMACAEAIQEGNLDLADVFVRHASVLASQQGGAMRKVATNFSHALARRIYGAYPNEPTSPSLSDMLHVHFYEACPYLKFAHFTANQAILEAFSNATTVHVIDFGLKQGLQWPALMQALALRPGGPPAFRLTGIGPPSPGNNTDTLQQVGWKLAQLARTIRIRFEFRGFACNSLSDLDPTVLDIKPGESVAVNAVFELHRLLAKPGSLERVLNTVKRIEPEMVTVVEQEANHNGPVFLERFTEAMHYYSSLFDSMEGSVNNEDGALSEVYLGRQICNVVACEGEERVERHETLAQWRIRMGSAGFEPVRLGSNAFRQARMLLALFAGGEGYRVEENDGCLLLGWQTRPLIATSAWRVGGGARRY 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1946g00002 533 ProSiteProfiles GRAS family profile. 158 525 IPR005202 -
Stsc1946g00002 533 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 131 521 IPR005202 -
Stsc1946g00002 533 SMART DELLA_2 26 111 - -
Stsc1946g00002 533 Pfam Transcriptional regulator DELLA protein N terminal 26 104 IPR021914 -
Stsc1946g00002 533 Pfam GRAS domain family 167 525 IPR005202 -
Stsc1946g00002 533 Gene3D - 24 101 IPR038088 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1946g00002 Stsc-Chr1946 6321 7922 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1946g00002 22 526 GRAS Transcription Factor Family AT1G14920 55.028 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc1946g00002 GRAS 8.7e-135 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1946g00002 K14494 - gmx:100799695 591.267