Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1944g00002 ATGGCCAAGACTAGCAAGAAATCAGCTTCCAAAGTTGAGACTGCTCCACCTGTCAAAAAGGGAAAGAGGCAGGCTGATGAGGAACTTGAGAAGCAAGTTAGTTTAAAGAAACAGAAGGTAGAAGAGGCTGCTCAGAAGCAAAAGAAGGAAGCTAAGGTGCAGAAGAAAAAGGAGGAAAGTAGTTCAGATGATTCTTCTTCAGAATCTGAAGATGAGAAACCTGCTCCTAAAGTTGCTGTTGCTTCAAAGAAGCAGCCTGCTAAGAACGGCGCTTTAACTGCCCCTGCAAAGAAAGCCAAGCCAGCTAGTAGTTCTAGCTCTGATGATTCTTCTTCAGACTCTGAAGATGAGCCTGCAGCTAAGGCTGTTCCTTCAAAAAGTCCAGCTGGAAAGAAAGCCAAGCCAGCTAGTAGTTCTAGCTCTGATGATTCTTCTTCAGAATCTGAAGATGAGAAACCTGCACCAAAGGCTGTTCCTGCCAAAAACGGGGCTCCAGCAAAGTCAGCCAAGCCAGCTTCCTCTTCAAGTTCTTCGGATGATGACTCTGACTCTGATGAAGTGCCCAAATCCAAGGTGCTGCCTGCTGCAGCTAAGAATGGATCTGCTTCTGCAAAGAAGCCAAGTGAAAGCTCTGAGTCTGAGGACAGCAGCTCTGATGAGGAAAATGATAAGAAAAAACCAGTAGCCAAATCAGCTGGAGTTCCAAGTAAGAAAGTTGAAACTACTGAAAGTTCATATGATGATTCAAGTGAAAGCTCTGAAGAAGAAGATGATAAAAAGCCTACTGCAAATGCAGCTTCCAAGCCTTCTGCTATAGCTAAGAAGGATGATGACACTGACAGTTCAGATTCTGATGATAGCAGCTCAGAAGATGACAAGAAAGCTGCTGTCAAGACTGTTTCCAATGCCAAGTCAGCACCTGCATCAAAGCCTGCCAAGAAGGCTAGTAGTTCTAGTGAGAGTGAGTCAGATGAGGACTCTTCTGATAGTGAATCTGAGGATGACAAGAAAAAAGCTAAAAGCTCCAGTCAGGCAAAAATGGATGTCGATGAAGAAGAGAGCTCCGATGACAGTGATGAGGAAGAAGATGAGAAACCTTCTAAAACTCCTCAGAAAGGCGGTAAGGATGTGGAGATGGTTGATGCTGACAAATCAGGAAAGAAAGCTCCTAAAACCCCTTCTACACCTAGTGCCGCAACAGGTGGATCAAAGACACTATTTGTTGGAAACCTGTCGTTTAGTGTGCAACGATCCGACATTGAGGAGTTTTTCAAAGATTATGGAGAAGTTGTTGATGTTCGTTTGGCTGTTGACGACACCGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTTCTACTGCAGAGGCAGCACAAAGTGCCCTTGGATTGAATGAGTATGAGTTATTGAATCGTCCTATTAAGCTTGATTTAGCTCGTGAAAGGGGCGCATATACCCCTGGTGGCAGCAATTCCTTCCAGAAAGGTGGTCAGCAGCAAACTGGTCAAACTATATACGTGAGGGGCTTTGATAAATCTCTTGGATTTGATGAGATAAGATCTACCCTAAATGAGGCATTTGGTTCCTATGGGGAGATCTCGAGGATGTCAATTCCGAAAGATTTTGAATCTGGAGAGCCTAAGGGGTTTGCTTACATTGACTTCACTGATTCATCTAGCATGAAGAAAGCTCTAGAACTCAACGATACTGAAGTTGGTGGTAATTACCTCTCAGTTGAGGAAGCCAAACCTAGAGGGGATAGCTTTGGTTCTGGTGGAAGAGGTGGTGGTGGTAGGAGTGGCGGTCGATTTGGAGGTGGTAGGAGTAATGAAGGCGGTCGATTCGGAGGAAGGAGCGGCGGTGGCCGATTTGGTGGTGGAAGGGGTGATAGAGGAGGCAGAGGTGGTCGAGGAAGAGGTGGTGGAAGGGGTTTTGGTAATAAACCAACCTTCGCTGCAGAAGGAAAAAAAACCACATTCGCTGATGACGACTAG 1992 0.4548 MAKTSKKSASKVETAPPVKKGKRQADEELEKQVSLKKQKVEEAAQKQKKEAKVQKKKEESSSDDSSSESEDEKPAPKVAVASKKQPAKNGALTAPAKKAKPASSSSSDDSSSDSEDEPAAKAVPSKSPAGKKAKPASSSSSDDSSSESEDEKPAPKAVPAKNGAPAKSAKPASSSSSSDDDSDSDEVPKSKVLPAAAKNGSASAKKPSESSESEDSSSDEENDKKKPVAKSAGVPSKKVETTESSYDDSSESSEEEDDKKPTANAASKPSAIAKKDDDTDSSDSDDSSSEDDKKAAVKTVSNAKSAPASKPAKKASSSSESESDEDSSDSESEDDKKKAKSSSQAKMDVDEEESSDDSDEEEDEKPSKTPQKGGKDVEMVDADKSGKKAPKTPSTPSAATGGSKTLFVGNLSFSVQRSDIEEFFKDYGEVVDVRLAVDDTGRFRGFGHVEFSTAEAAQSALGLNEYELLNRPIKLDLARERGAYTPGGSNSFQKGGQQQTGQTIYVRGFDKSLGFDEIRSTLNEAFGSYGEISRMSIPKDFESGEPKGFAYIDFTDSSSMKKALELNDTEVGGNYLSVEEAKPRGDSFGSGGRGGGGRSGGRFGGGRSNEGGRFGGRSGGGRFGGGRGDRGGRGGRGRGGGRGFGNKPTFAAEGKKTTFADDD 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1944g00002 663 SMART rrm1_1 405 476 IPR000504 GO:0003723
Stsc1944g00002 663 SMART rrm1_1 503 579 IPR000504 GO:0003723
Stsc1944g00002 663 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 520 576 IPR000504 GO:0003723
Stsc1944g00002 663 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 406 474 IPR000504 GO:0003723
Stsc1944g00002 663 MobiDBLite consensus disorder prediction 364 388 - -
Stsc1944g00002 663 MobiDBLite consensus disorder prediction 271 298 - -
Stsc1944g00002 663 MobiDBLite consensus disorder prediction 16 78 - -
Stsc1944g00002 663 MobiDBLite consensus disorder prediction 331 349 - -
Stsc1944g00002 663 Gene3D - 488 619 IPR012677 -
Stsc1944g00002 663 MobiDBLite consensus disorder prediction 1 403 - -
Stsc1944g00002 663 SUPERFAMILY RNA-binding domain, RBD 395 497 IPR035979 GO:0003676
Stsc1944g00002 663 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 404 480 IPR000504 GO:0003723
Stsc1944g00002 663 MobiDBLite consensus disorder prediction 578 663 - -
Stsc1944g00002 663 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 502 583 IPR000504 GO:0003723
Stsc1944g00002 663 MobiDBLite consensus disorder prediction 302 316 - -
Stsc1944g00002 663 SUPERFAMILY RNA-binding domain, RBD 498 613 IPR035979 GO:0003676
Stsc1944g00002 663 Coils Coil 26 61 - -
Stsc1944g00002 663 Gene3D - 313 486 IPR012677 -
Stsc1944g00002 663 MobiDBLite consensus disorder prediction 208 230 - -
Stsc1944g00002 663 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 40 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1944g00002 Stsc-Chr1944 2667 8030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1944g00002 396 582 Eukaryotic Initiation Factors Gene Family AT1G22760 28.061 1.18e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1944g00002 K11294 - ahf:112789008 515.383