Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1944g00001 ATGGCAGCTACATTGCCCTCGAATCTCTTGGCAAGCCCTTCGAGTCCTGAATGGATGAACAAAGCCGACAATGCGTGGCAACTCGTGTCGGCGACACTTGTCGGCCTTCAAAGTGTTCCTGGACTCATAATCTTGTATGGAGGAGCAGTGAAGAAGAAATGGGCAGTGAACTCAGCATTCATGTCCTTATATGCATTTGCATGTGTTTTCTTCTGTTGGATTGCATGGGGTTATAGAATGTCCTTCGGTGATAACCTTTTACCATTTTGGGGTAAAGCTGCTGTTGCACTTGATGAGAAGTACCTTCTTGACCCTGCATTTTCTGGGATGTTCCCAAATGCAACAATGGTGTATTTCCAGTGTGTGTTTGCAGCTATAACTCTGATTTTGATAGCAGGTGCTTTGTTGGGAAGAATGAACTTCTATGCATGGATGCTGTTTGTGCCTCTTTGGCTCACTTTCTCATACACTTTCACTGCATTCAGTATATGGAGTCCAAATGGATTCTTGTTCAAGCTAGGAATAATTGATTACTCTGGTGGATATGTTATTCATTTGTCTTCTGGTGTTGCTGGATTCACTGCTGCTTATTGGGTTGGGCCTCGGCTTAACAAGGACAGAGAAAGGTTCCCTCCAAACAACATCCTATTGATGTTGGCTGGGGCTGGCTTACTGTGGATGGGGTGGACCGGCTTCAATGGCGGTGACCCCTACTCAGTAGGCATAGATTCCTCCCTGGCCGTTTTGAACACTCATGCTTGCACTGCCACCAGCTTGCTCACTTGGGTCATTCTTGATGTCATCTTCTTCCGCAAACCCTCTGTTATTGGTGCTGTTCAAGGCATGATCACCGGCTTGGTCTGCATTACCCCTGCTGCAGGAGTTGTGCAAGGATGGGCAGCAATTCTAATGGGGATTCTATCTGGTTCAATTCCATGGTTCACAATGATGGTAGTTCACAAGAGATCAAAGCTTCTCCAAAAGGTGGATGACACAATGGCAGTGTTGCACACTCATGCCATTGCAGGAAGCCTTGGAGGAGTTCTCTCAGGCCTATTTGCTGTGCCAAAGCTCAACTTCTTATTCTATGGTAGTTACAACAAATATGTTGGACTCTTCTATGGCCTCCAAATGGGAATAGGCAGAACAGG 1151 0.4613 MAATLPSNLLASPSSPEWMNKADNAWQLVSATLVGLQSVPGLIILYGGAVKKKWAVNSAFMSLYAFACVFFCWIAWGYRMSFGDNLLPFWGKAAVALDEKYLLDPAFSGMFPNATMVYFQCVFAAITLILIAGALLGRMNFYAWMLFVPLWLTFSYTFTAFSIWSPNGFLFKLGIIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYSVGIDSSLAVLNTHACTATSLLTWVILDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAILMGILSGSIPWFTMMVVHKRSKLLQKVDDTMAVLHTHAIAGSLGGVLSGLFAVPKLNFLFYGSYNKYVGLFYGLQMGIGRTG 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1944g00001 384 PANTHER AMMONIUM TRANSPORTER MEP2 7 373 IPR001905 GO:0008519|GO:0016020|GO:0072488
Stsc1944g00001 384 SUPERFAMILY Ammonium transporter 18 374 - -
Stsc1944g00001 384 ProSitePatterns Ammonium transporters signature. 177 202 IPR018047 GO:0008519|GO:0016020|GO:0072488
Stsc1944g00001 384 PRINTS Rhesus blood group protein signature 247 269 IPR002229 GO:0005886
Stsc1944g00001 384 PRINTS Rhesus blood group protein signature 344 360 IPR002229 GO:0005886
Stsc1944g00001 384 PRINTS Rhesus blood group protein signature 120 136 IPR002229 GO:0005886
Stsc1944g00001 384 PRINTS Rhesus blood group protein signature 216 234 IPR002229 GO:0005886
Stsc1944g00001 384 Pfam Ammonium Transporter Family 25 375 IPR024041 GO:0008519|GO:0016020|GO:0072488
Stsc1944g00001 384 Gene3D Ammonium transporter AmtB like domains 7 381 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1944g00001 Stsc-Chr1944 1 1645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1944g00001 114 361 Inorganic Solute Cotransporters AT2G38290 69.758 3.36e-115 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1944g00001 K03320 - gmx:100787856 660.218