Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc193g00006 ATGAAATGGAAGAGAGAGAGAAGCAAGTTGAGGCAGCAGCAGAAAGGTGATCAAATTCCAAGGCCACAAGTCCCTTCCATGATCCAAAACACAAGCTGCAAATCCACCATATCTTCTCTAATCCTCTCTTCTTTCTCCAATGAAACCACAGCAAACAAGAACAACAAGAGCATTACATTCAGGGGACTTGGTTGCACTGCTGCTTCTGCATCATCACAACAAGTCTCAGTTCCTGCTGTGATTCGTTCCTCTGCTGATTGGCATCATCCCAACAACAGCAGCAGGAAGAACAAGAAGTGTAGCAGGAGGAACACTGAGAAAAGCACCATAACATGTCACCATAAACATGCTGCTTCTTCTTCTTCTTTTCAGGATGTATGGTGTGGCCCTGGAATTGGATTCTCCTCTGATCATGCTTCTGCTTCTGTGGATTGTGTGGTGGCAAGGAAGAATGCCTCTGCCTCTTCAAGAAGGAACCTTGATGCTGTGGAGAGACCAACACATAGAGAAGAGCGTCCTCCGCCTTATTTGGGAAGGCGCGCCGGCACCATGAACACAGGACTCTCTTTCTTGGATGATGATCAAGGCATTTTCGCGACACGCCCCGGATCGGAGTCTTTCCCAGCCGGTAGATACTTTCGCCATCTTCCACATCCCTCCTCTGATGGTCTTGCTGAGATAATGATACTTCAAGGAAGATTATTAATGGGTGGAAGATTAAATTCACATGATCAATTTAGAGACTGGAGACTCGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTGGGTGAGAGAATTGGCCATGTGAACACTGGACTTAAAGAAGATGAGATGGGACACAATATCAGGAAAATTAAGCATGTAATTTCAAACAACAATTCAAAGCATCAAACGGACAAAAAGTGCAGCATTTGTCAGGAGGAGTATGAAGCTGATGATGAAATTGGGAGGCTAAATTGTGAACACAAGTATCACTTTCAGTGTATAAAACAATGGCTTGTCCATAAAAACTTCTGTCCAGTTTGCAAGCAAGAAGTTGTAGTTCGACTCTGA 1059 0.441 MKWKRERSKLRQQQKGDQIPRPQVPSMIQNTSCKSTISSLILSSFSNETTANKNNKSITFRGLGCTAASASSQQVSVPAVIRSSADWHHPNNSSRKNKKCSRRNTEKSTITCHHKHAASSSSFQDVWCGPGIGFSSDHASASVDCVVARKNASASSRRNLDAVERPTHREERPPPYLGRRAGTMNTGLSFLDDDQGIFATRPGSESFPAGRYFRHLPHPSSDGLAEIMILQGRLLMGGRLNSHDQFRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGHNIRKIKHVISNNNSKHQTDKKCSICQEEYEADDEIGRLNCEHKYHFQCIKQWLVHKNFCPVCKQEVVVRL 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc193g00006 352 SMART ring_2 304 344 IPR001841 -
Stsc193g00006 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 51 348 IPR045191 GO:0061630
Stsc193g00006 352 MobiDBLite consensus disorder prediction 1 26 - -
Stsc193g00006 352 MobiDBLite consensus disorder prediction 82 105 - -
Stsc193g00006 352 SUPERFAMILY RING/U-box 292 350 - -
Stsc193g00006 352 ProSiteProfiles Zinc finger RING-type profile. 304 345 IPR001841 -
Stsc193g00006 352 Pfam Ring finger domain 303 345 IPR001841 -
Stsc193g00006 352 FunFam E3 ubiquitin-protein ligase rnf12-A 271 350 - -
Stsc193g00006 352 MobiDBLite consensus disorder prediction 155 181 - -
Stsc193g00006 352 MobiDBLite consensus disorder prediction 161 176 - -
Stsc193g00006 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 350 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc193g00006 Stsc-Chr193 49853 52440 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc193g00006 34 259 C3H Transcription Factor Family AT1G73760 42.149 2.64e-38 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc193g00006 - - ahf:112751066 476.863