Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc193g00005 ATGGCTGTTGTAACAGAACAAGATATGAAATGGAAGAGAGAGAGAAGCAAGTTGAGGCAGCAGCAGAAAGGTGATCAAATTCCAAGGCCACAAGTCCCTTCCATGATCCAAAACACAAGCTGCAAATCCACCATATCTTCTCTAATCCTCTCTTCTTTCTCCAATGAAACCACAGCAAACAAGAACAACAAGAGCATTACATTCAGGGGACTTGGTTGCACTGCTGCTTCTGCATCATCACAACAAGTCTCAGTTCCTGCTGTGATTCGTTCCTCTGCTGATTGGCATCATCCCAACAACAGCAGCAGGAAGAACAAGAAGTGTAGCAGGAGGAACACTGAGAAAAGCACCATAACATGTCACCATAAACATGCTGCTTCTTCTTCTTCTTTTCAGGATGTATGGTGTGGCCCTGGAATTGGATTCTCCTCTGATCATGCTTCTGCTTCTGTGGATTGTGTGGTGGCAAGGAAGAATGCCTCTGCCTCTTCAAGAAGGAACCTTGATGCTGTGGAGAGACCAACACATAGAGAAGAGCGTCCTCCGCCTTATTTGGGAAGGCGCGCCGGCACCATGAACACAGGACTCTCTTTCTTGGATGATGATCAAGGCATTTTCGCGACACGCCCCGGATCGGAGTCTTTCCCAGCCGGTAGATACTTTCGCCATCTTCCACATCCCTCCTCTGATGGTCTTGCTGAGATAATGATACTTCAAGGAAGATTATTAATGGGTGGAAGATTAAATTCACATGATCAATTTAGAGACTGGAGACTCGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTGGGTGAGAGAATTGGCCATGTGAACACTGGACTTAAAGAAGATGAGATGGGACACAATATCAGGAAAATTAAGCATGTAATTTCAAACAACAATTCAAAGCATCAAACGGACAAAAAGTGCAGCATTTGTCAGGAGGAGTATGAAGCTGATGATGAAATTGGGAGGCTAAATTGTGAACACAAGTATCACTTTCAGTGTATAAAACAATGGCTTGTCCATAAAAACTTCTGTCCAGTTTGCAAGCAAGAAGTTGTAGTTCGACTCTGA 1083 0.4395 MAVVTEQDMKWKRERSKLRQQQKGDQIPRPQVPSMIQNTSCKSTISSLILSSFSNETTANKNNKSITFRGLGCTAASASSQQVSVPAVIRSSADWHHPNNSSRKNKKCSRRNTEKSTITCHHKHAASSSSFQDVWCGPGIGFSSDHASASVDCVVARKNASASSRRNLDAVERPTHREERPPPYLGRRAGTMNTGLSFLDDDQGIFATRPGSESFPAGRYFRHLPHPSSDGLAEIMILQGRLLMGGRLNSHDQFRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGHNIRKIKHVISNNNSKHQTDKKCSICQEEYEADDEIGRLNCEHKYHFQCIKQWLVHKNFCPVCKQEVVVRL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc193g00005 360 MobiDBLite consensus disorder prediction 90 113 - -
Stsc193g00005 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 358 IPR013083 -
Stsc193g00005 360 Pfam Ring finger domain 311 353 IPR001841 -
Stsc193g00005 360 SUPERFAMILY RING/U-box 300 358 - -
Stsc193g00005 360 ProSiteProfiles Zinc finger RING-type profile. 312 353 IPR001841 -
Stsc193g00005 360 MobiDBLite consensus disorder prediction 7 22 - -
Stsc193g00005 360 MobiDBLite consensus disorder prediction 1 34 - -
Stsc193g00005 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 58 356 IPR045191 GO:0061630
Stsc193g00005 360 SMART ring_2 312 352 IPR001841 -
Stsc193g00005 360 FunFam E3 ubiquitin-protein ligase rnf12-A 279 358 - -
Stsc193g00005 360 MobiDBLite consensus disorder prediction 169 184 - -
Stsc193g00005 360 MobiDBLite consensus disorder prediction 163 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc193g00005 Stsc-Chr193 49853 52440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc193g00005 7 267 C3H Transcription Factor Family AT1G73760 39.858 1.54e-38 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc193g00005 - - ahf:112751066 489.189