Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc191g00002 ATGTTGGACTACGAATGGGGGAACCCATCCATAATGCTCACCGGAAACGAAGACGGCGCACCACCACCGCCTTCCGACCAAACCCACCGCCAAATCTTCGACCACTACGCCTCTCACGCCCTGCTGCCCGACCACTTCTTGCATGGGCCCGGGGCTACAACAACAGCCACAAATAACTCAAACAACAACACCACCACCATCGATCTCTCCCACCATCATTTCAACCCGCAACAAGCCCACCACCACGTCCCCCAACACAGCTTCTTCGACCTACGGGCCTACCATGGGGCCCCCGCCACCCACTACCCACCGCCACAGCCCCAACCCCCGCCTCCCCCGCCCATGCTTTCCCTTGATCCCTTACCCCACCACACCCACTGCGGGCCCGGGCACGGGCTCATGCTGGTGCCGAAATCTGAGGATGTCGGTCGGCCCATGGACTTCGTGGGCTCTCGAATTGGGCTGAACCTGGGAGGACGCACCTACTTCTCCTCCTCGGAGGATGATTTCGTGAGCAGGCTGTACCGCAGGTCTCGGCCCAGTGAACCCGGGTCAACGCCGTCGTCGAACTCCCCTCGGTGCCAGGCGGAGGGGTGCAATGCTGATCTGTCTCAGGCGAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTTCCACTCCAAGGCCTCCACCGTCATCGCAGCCGGCATGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTCCATCTTCTCTCTGAGTTCGATAACGGAAAACGTAGCTGCAGGAAGAGACTGGCAGATCATAATCGTCGCAGAAGAAAAACTCAGCAGCCACCAACAGCTACAACACAAGACATCCACAAATCTTCTCAGCCTCCTAATAATAATTTGGATAACGTTGCAAGGTCCCCACCAGAATCCGGAGCTCAGTCAAATTCGTCCGTAACGGTGGCGGTGTCACCGCCTGATTACTTCCGGCAAAGGCCATACCAAAGCGGAAGCCCATCAACGACTTCAAGTTCACTGTTCTTCTCAAGCGGGCAGTGA 1026 0.5799 MLDYEWGNPSIMLTGNEDGAPPPPSDQTHRQIFDHYASHALLPDHFLHGPGATTTATNNSNNNTTTIDLSHHHFNPQQAHHHVPQHSFFDLRAYHGAPATHYPPPQPQPPPPPPMLSLDPLPHHTHCGPGHGLMLVPKSEDVGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPSEPGSTPSSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKASTVIAAGMTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPPTATTQDIHKSSQPPNNNLDNVARSPPESGAQSNSSVTVAVSPPDYFRQRPYQSGSPSTTSSSLFFSSGQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc191g00002 341 MobiDBLite consensus disorder prediction 179 196 - -
Stsc191g00002 341 MobiDBLite consensus disorder prediction 176 196 - -
Stsc191g00002 341 MobiDBLite consensus disorder prediction 100 118 - -
Stsc191g00002 341 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 103 333 IPR044817 GO:0003677
Stsc191g00002 341 MobiDBLite consensus disorder prediction 1 27 - -
Stsc191g00002 341 Pfam SBP domain 194 267 IPR004333 GO:0003677
Stsc191g00002 341 MobiDBLite consensus disorder prediction 320 341 - -
Stsc191g00002 341 Gene3D - 184 255 IPR036893 GO:0003677|GO:0005634
Stsc191g00002 341 MobiDBLite consensus disorder prediction 269 313 - -
Stsc191g00002 341 MobiDBLite consensus disorder prediction 96 118 - -
Stsc191g00002 341 SUPERFAMILY SBT domain 192 271 IPR036893 GO:0003677|GO:0005634
Stsc191g00002 341 FunFam Squamosa promoter-binding-like protein 14 185 255 - -
Stsc191g00002 341 MobiDBLite consensus disorder prediction 257 341 - -
Stsc191g00002 341 ProSiteProfiles Zinc finger SBP-type profile. 191 268 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc191g00002 Stsc-Chr191 21092 23114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc191g00002 1 241 SBP-box Gene Family AT1G02065 45.802 4.32e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc191g00002 SBP 4.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc191g00002 - - gmx:100778566 469.929