Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc18g00025 ATGGCTTACACTGCTACTCCTCAGATTCTGTTACACAATTCCATATTAGGAAGACGAGCAAGGTTCTTGAGAGGGACACGAACATCATCCACAACAAACACTAACATTAGTTTGCAGGTGCAGGCTTCAAAGGGCCCTGGCAACAACAAAAGAAGAGCACCCCCTTCCCCTGGAGTGGACACAAGAATCCACTGGGAAAATGAAAATGAAGGTTGGGTTGGAGGTGGTAGCAAACAACAACAATCCACTTCATCAGACAATAAGAACCCTAAGAATCTCTTAGGAGAATCATTCGCTGATTTGCTCAGCGCTTCCTCAGGTTCCCATTACGAATTCTTAGGAGTACCTGCGGATGCGGATTTAGAAGAAATCAAGACTGCTTACCGGAGACTATCGAAGGAGTACCATCCAGACACAACTTCGCTGCCTCTCAAAACTGCTTCAGAGAAATTCATGAAACTGAGGGAGATCTACGATGTTCTGAGCGACGAAGAGAGTCGAAGGTTCTATGATTGGACTCTTGCTCAAGAAGCTGCAAGCCGGCAAGCAGAGAAGATAAAAATGAGATTAGAGGATCCTTATGAGCAACAACTCAGAAGCTATGAACCAGTTCCAGACATGGTTGACCGTCTTGGTGGCAAGAATATGAAGCTTAGCGATCAAGCTGTTTCTGCCCTAACTATTGATGTCTTCATCATTATTTTCGCCATTTGTTGCATCGTTTATGTAACAATATTCAAAGCTCCATATTACTATTAG 759 0.4374 MAYTATPQILLHNSILGRRARFLRGTRTSSTTNTNISLQVQASKGPGNNKRRAPPSPGVDTRIHWENENEGWVGGGSKQQQSTSSDNKNPKNLLGESFADLLSASSGSHYEFLGVPADADLEEIKTAYRRLSKEYHPDTTSLPLKTASEKFMKLREIYDVLSDEESRRFYDWTLAQEAASRQAEKIKMRLEDPYEQQLRSYEPVPDMVDRLGGKNMKLSDQAVSALTIDVFIIIFAICCIVYVTIFKAPYYY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc18g00025 252 ProSiteProfiles dnaJ domain profile. 108 174 IPR001623 -
Stsc18g00025 252 Pfam DnaJ domain 109 171 IPR001623 -
Stsc18g00025 252 SUPERFAMILY Chaperone J-domain 106 176 IPR036869 -
Stsc18g00025 252 Gene3D DnaJ domain 99 194 IPR036869 -
Stsc18g00025 252 MobiDBLite consensus disorder prediction 41 92 - -
Stsc18g00025 252 PRINTS DnaJ domain signature 146 166 IPR001623 -
Stsc18g00025 252 PRINTS DnaJ domain signature 128 143 IPR001623 -
Stsc18g00025 252 PRINTS DnaJ domain signature 110 128 IPR001623 -
Stsc18g00025 252 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 1 250 IPR044618 -
Stsc18g00025 252 MobiDBLite consensus disorder prediction 73 92 - -
Stsc18g00025 252 ProSitePatterns Nt-dnaJ domain signature. 151 170 IPR018253 -
Stsc18g00025 252 FunFam DnaJ homolog subfamily C member 4 97 195 - -
Stsc18g00025 252 CDD DnaJ 109 163 IPR001623 -
Stsc18g00025 252 SMART dnaj_3 107 166 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc18g00025 Stsc-Chr18 242449 243678 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc18g00025 109 176 C2H2 Transcription Factor Family AT1G74250 37.500 4.32e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc18g00025 K23051 - qsa:O6P43_001846 310.842