Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc18g00022 ATGGACGTAATGCTCATCAGTGGTACCATCTTTGTTGTGCTTGCAGAAACCAATGATCCCAAGAGTTCAAGGGTAATTATCTTCTCTAATTATAGAGAAAGTGTCAGGGACATTATGGGTGCACTTGGAAATGTTGGGGAACCAGTCAGAGCTACTGAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAGGGTCAATCTCAAAAAGTTCAACAGGCTGTGTTGAAGAAATTTCGGTCCGGTGCCTACAATGTTATTGTTGCTACATCAATCGGTGAAGAAGGTCTTGATATAATGGAAGTTGATCTTGTCATATCTTTTGATGCCAATATTTCACCACTTAGAATGATTCAGCGAATGGGAAGAACTGGAAGAAAGCATGATGGACGAGTTGATATCCTTTGGTTGCCAGTTTTGTGTACTGGCTTGTTAACAATGAGAAAAGCAATTGACGTGGATGGGGGGTCAGAGTTGAAAGCCTACATGCGAAAGAAGGCAAAGAGCAAGACTATAAGTAAACACATGCAAAATGGGGGCGTAGATAGCTTCAACTTTCATCCTAGTCCAAGAATGATTCCGCATGTCTTCAAACCTGAAGTTCAATATGTTGAGCTGTCAATTGAGAAATTTATTCCTCGTGAAAAGAATGTGAAAGATGTCCCTCTTCCATTTTATCCATCCATTGATAAACTCACTGTTGCTGAGATGGATTTACTCGAAATGTATTTCCAAACTACTGGGGAAAATACATGTAGAATGTCTCTTATTTCCTATCCTTACTTTCAAACCTTTCCTTCTAGAGTTCATAAAGTGAAGCATTCCCTTAGAGCAATGATGCTTATTGACACGATGCGGTGTTTGCAAGGATTAGAAACATGTCCAGGAGATAACAAAACTACTTCTCTTCAGGAAGGTCCGTGTTCAGTAAACAGCCAGCCGTTTATCATTTCCGAGGCCAAACATGACACTGAATCATGCTTTAGCCATACAATGGAAACGAATGTTGAGACTGTAAATTGTATGAACTCGGATTCCCATCATTTGAGGATTCAAACCAAAGATACCATTGATCTAACTATACAAGAAGATAGTACTTTCGATGACTTGGTTGAGCATCAAGAGGATACATTCCAGGGTGATGAGATAGTTCCCGAGACTCCGGTTGCTAATAAAAATGTATCAAATGGAGGTAATAATGCTGGTGAAACGGCCAATCTTTTGGTCAAGACTCGATTGTTTCAGGAAGATGTATGCACTAATGGCATTAGAGAAGGAGAATTTAGTCCTCGCTTAACTGATTTCATTACAAGTGGTGTTGTTCCAGAGTCTCCTGTTGATGATGAACAAGAGAAATCAAGAGGCAAGTCTGTCATTCGAGACTGTATTTTGCCTGTTCAACTCCACAAAGAACACGATACGAGTCCCTTGAGCTGTGAAAAAGTTGTAATTGATGGAAGTACTGGCAAGAATGTCACTAGTTCTCCAGTATATAATGGAACCCGAACCCCTTTACTTGAGCTGAAGAATTCTGCAATTAAAAGACGACGCATCATTTTTTCCCAAACTGAGGAAGGGCACTCTCACAAGTCTGACTCAAGCTTCAGTGAAGAATCACATTTAGGCTCTGGTAAAATACCTGGAACTGTAAGCATTAAACCTTTGCGCAAATTGAAAAGGTTGCGGAAAGCTGAAGATGGTGACAGCAAAGTGAATCAGGAAAACAATGACCCTACCCGATATAAGCATGGTCAAGGTAAAAGGAAATCAACGAATAATGTCAAAGACTTCATTGAGGAGGAAGCTGAGGTTTCTGGAGACTCAAATGTATCTAGTGACAAAGATGGCGAAGATGACAATTCTTATGAGGACAGTTTCATTGATGACAGGACAAATCCTATAGGAGAAAGTCAGCCTGAAGTTAGTAGACCGGACATGATGGCAATTTACAGGCGTTCTTTGCTTACTCAAACGCAGATTAATGGAGGTTACGGGTCTTCTGCCATGTTCAGCCCAGACAGTGTGACTAATGAAAGTGGGGTTTCTTCAGGCAAGACAGTAATGAGTCATGTTAATGGCAGCTGCATAGCCCCAGAAAAAGTGCCTTCAACTAGTTCCCCTACAGGAGACACTACAAGTCATAAAAGAAGATTGTCATTTTATCATTCAGAAGGACACCTTCCAATTATGAACCTTGAACAAGAATTTGCTCTTCAATCAAAGAAAGAGTTGGTGGACGCCCCTGATTTCACTGTGGATTATGAATGCGATGATCAATTTTATAACGACCTTGATCTTGATGAGTTGGAGGCACAAGCAATCTCACTTCATAAAAAGAAATTAGATATGTCAACTCAGAAGAAAGATACAAATCCTTTTTATAACGACCTTGATCTTGACGAGTTGGAGGCACAAGCAATCTCACTTCATAAAAAGAAACTAGATATGTCAACTCAGAAGAAAGATACAAATCCTCTACCTCACTCTCCAAAGGAAGATAGCTTTTGGTCTCCATCGTTTGACCTTGGCATATGA 2532 0.4017 MDVMLISGTIFVVLAETNDPKSSRVIIFSNYRESVRDIMGALGNVGEPVRATEFIGQSSGKAMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVDILWLPVLCTGLLTMRKAIDVDGGSELKAYMRKKAKSKTISKHMQNGGVDSFNFHPSPRMIPHVFKPEVQYVELSIEKFIPREKNVKDVPLPFYPSIDKLTVAEMDLLEMYFQTTGENTCRMSLISYPYFQTFPSRVHKVKHSLRAMMLIDTMRCLQGLETCPGDNKTTSLQEGPCSVNSQPFIISEAKHDTESCFSHTMETNVETVNCMNSDSHHLRIQTKDTIDLTIQEDSTFDDLVEHQEDTFQGDEIVPETPVANKNVSNGGNNAGETANLLVKTRLFQEDVCTNGIREGEFSPRLTDFITSGVVPESPVDDEQEKSRGKSVIRDCILPVQLHKEHDTSPLSCEKVVIDGSTGKNVTSSPVYNGTRTPLLELKNSAIKRRRIIFSQTEEGHSHKSDSSFSEESHLGSGKIPGTVSIKPLRKLKRLRKAEDGDSKVNQENNDPTRYKHGQGKRKSTNNVKDFIEEEAEVSGDSNVSSDKDGEDDNSYEDSFIDDRTNPIGESQPEVSRPDMMAIYRRSLLTQTQINGGYGSSAMFSPDSVTNESGVSSGKTVMSHVNGSCIAPEKVPSTSSPTGDTTSHKRRLSFYHSEGHLPIMNLEQEFALQSKKELVDAPDFTVDYECDDQFYNDLDLDELEAQAISLHKKKLDMSTQKKDTNPFYNDLDLDELEAQAISLHKKKLDMSTQKKDTNPLPHSPKEDSFWSPSFDLGI 843
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc18g00022 843 Gene3D - 7 137 IPR027417 -
Stsc18g00022 843 MobiDBLite consensus disorder prediction 558 615 - -
Stsc18g00022 843 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 9 179 IPR001650 -
Stsc18g00022 843 Pfam Helicase conserved C-terminal domain 20 126 IPR001650 -
Stsc18g00022 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 135 IPR027417 -
Stsc18g00022 843 MobiDBLite consensus disorder prediction 697 713 - -
Stsc18g00022 843 MobiDBLite consensus disorder prediction 694 713 - -
Stsc18g00022 843 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 17 789 - -
Stsc18g00022 843 FunFam ATP-dependent RNA helicase, putative 10 142 - -
Stsc18g00022 843 MobiDBLite consensus disorder prediction 520 535 - -
Stsc18g00022 843 MobiDBLite consensus disorder prediction 812 843 - -
Stsc18g00022 843 SMART helicmild6 37 127 IPR001650 -
Stsc18g00022 843 MobiDBLite consensus disorder prediction 520 639 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc18g00022 Stsc-Chr18 221310 226306 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc18g00022 68 142 Eukaryotic Initiation Factors Gene Family AT3G13920 31.461 8.51e-07 50.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc18g00022 K10896 - vra:106756418 764.607