Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc18g00022 | ATGGACGTAATGCTCATCAGTGGTACCATCTTTGTTGTGCTTGCAGAAACCAATGATCCCAAGAGTTCAAGGGTAATTATCTTCTCTAATTATAGAGAAAGTGTCAGGGACATTATGGGTGCACTTGGAAATGTTGGGGAACCAGTCAGAGCTACTGAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAGGGTCAATCTCAAAAAGTTCAACAGGCTGTGTTGAAGAAATTTCGGTCCGGTGCCTACAATGTTATTGTTGCTACATCAATCGGTGAAGAAGGTCTTGATATAATGGAAGTTGATCTTGTCATATCTTTTGATGCCAATATTTCACCACTTAGAATGATTCAGCGAATGGGAAGAACTGGAAGAAAGCATGATGGACGAGTTGATATCCTTTGGTTGCCAGTTTTGTGTACTGGCTTGTTAACAATGAGAAAAGCAATTGACGTGGATGGGGGGTCAGAGTTGAAAGCCTACATGCGAAAGAAGGCAAAGAGCAAGACTATAAGTAAACACATGCAAAATGGGGGCGTAGATAGCTTCAACTTTCATCCTAGTCCAAGAATGATTCCGCATGTCTTCAAACCTGAAGTTCAATATGTTGAGCTGTCAATTGAGAAATTTATTCCTCGTGAAAAGAATGTGAAAGATGTCCCTCTTCCATTTTATCCATCCATTGATAAACTCACTGTTGCTGAGATGGATTTACTCGAAATGTATTTCCAAACTACTGGGGAAAATACATGTAGAATGTCTCTTATTTCCTATCCTTACTTTCAAACCTTTCCTTCTAGAGTTCATAAAGTGAAGCATTCCCTTAGAGCAATGATGCTTATTGACACGATGCGGTGTTTGCAAGGATTAGAAACATGTCCAGGAGATAACAAAACTACTTCTCTTCAGGAAGGTCCGTGTTCAGTAAACAGCCAGCCGTTTATCATTTCCGAGGCCAAACATGACACTGAATCATGCTTTAGCCATACAATGGAAACGAATGTTGAGACTGTAAATTGTATGAACTCGGATTCCCATCATTTGAGGATTCAAACCAAAGATACCATTGATCTAACTATACAAGAAGATAGTACTTTCGATGACTTGGTTGAGCATCAAGAGGATACATTCCAGGGTGATGAGATAGTTCCCGAGACTCCGGTTGCTAATAAAAATGTATCAAATGGAGGTAATAATGCTGGTGAAACGGCCAATCTTTTGGTCAAGACTCGATTGTTTCAGGAAGATGTATGCACTAATGGCATTAGAGAAGGAGAATTTAGTCCTCGCTTAACTGATTTCATTACAAGTGGTGTTGTTCCAGAGTCTCCTGTTGATGATGAACAAGAGAAATCAAGAGGCAAGTCTGTCATTCGAGACTGTATTTTGCCTGTTCAACTCCACAAAGAACACGATACGAGTCCCTTGAGCTGTGAAAAAGTTGTAATTGATGGAAGTACTGGCAAGAATGTCACTAGTTCTCCAGTATATAATGGAACCCGAACCCCTTTACTTGAGCTGAAGAATTCTGCAATTAAAAGACGACGCATCATTTTTTCCCAAACTGAGGAAGGGCACTCTCACAAGTCTGACTCAAGCTTCAGTGAAGAATCACATTTAGGCTCTGGTAAAATACCTGGAACTGTAAGCATTAAACCTTTGCGCAAATTGAAAAGGTTGCGGAAAGCTGAAGATGGTGACAGCAAAGTGAATCAGGAAAACAATGACCCTACCCGATATAAGCATGGTCAAGGTAAAAGGAAATCAACGAATAATGTCAAAGACTTCATTGAGGAGGAAGCTGAGGTTTCTGGAGACTCAAATGTATCTAGTGACAAAGATGGCGAAGATGACAATTCTTATGAGGACAGTTTCATTGATGACAGGACAAATCCTATAGGAGAAAGTCAGCCTGAAGTTAGTAGACCGGACATGATGGCAATTTACAGGCGTTCTTTGCTTACTCAAACGCAGATTAATGGAGGTTACGGGTCTTCTGCCATGTTCAGCCCAGACAGTGTGACTAATGAAAGTGGGGTTTCTTCAGGCAAGACAGTAATGAGTCATGTTAATGGCAGCTGCATAGCCCCAGAAAAAGTGCCTTCAACTAGTTCCCCTACAGGAGACACTACAAGTCATAAAAGAAGATTGTCATTTTATCATTCAGAAGGACACCTTCCAATTATGAACCTTGAACAAGAATTTGCTCTTCAATCAAAGAAAGAGTTGGTGGACGCCCCTGATTTCACTGTGGATTATGAATGCGATGATCAATTTTATAACGACCTTGATCTTGATGAGTTGGAGGCACAAGCAATCTCACTTCATAAAAAGAAATTAGATATGTCAACTCAGAAGAAAGATACAAATCCTTTTTATAACGACCTTGATCTTGACGAGTTGGAGGCACAAGCAATCTCACTTCATAAAAAGAAACTAGATATGTCAACTCAGAAGAAAGATACAAATCCTCTACCTCACTCTCCAAAGGAAGATAGCTTTTGGTCTCCATCGTTTGACCTTGGCATATGA | 2532 | 0.4017 | MDVMLISGTIFVVLAETNDPKSSRVIIFSNYRESVRDIMGALGNVGEPVRATEFIGQSSGKAMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVDILWLPVLCTGLLTMRKAIDVDGGSELKAYMRKKAKSKTISKHMQNGGVDSFNFHPSPRMIPHVFKPEVQYVELSIEKFIPREKNVKDVPLPFYPSIDKLTVAEMDLLEMYFQTTGENTCRMSLISYPYFQTFPSRVHKVKHSLRAMMLIDTMRCLQGLETCPGDNKTTSLQEGPCSVNSQPFIISEAKHDTESCFSHTMETNVETVNCMNSDSHHLRIQTKDTIDLTIQEDSTFDDLVEHQEDTFQGDEIVPETPVANKNVSNGGNNAGETANLLVKTRLFQEDVCTNGIREGEFSPRLTDFITSGVVPESPVDDEQEKSRGKSVIRDCILPVQLHKEHDTSPLSCEKVVIDGSTGKNVTSSPVYNGTRTPLLELKNSAIKRRRIIFSQTEEGHSHKSDSSFSEESHLGSGKIPGTVSIKPLRKLKRLRKAEDGDSKVNQENNDPTRYKHGQGKRKSTNNVKDFIEEEAEVSGDSNVSSDKDGEDDNSYEDSFIDDRTNPIGESQPEVSRPDMMAIYRRSLLTQTQINGGYGSSAMFSPDSVTNESGVSSGKTVMSHVNGSCIAPEKVPSTSSPTGDTTSHKRRLSFYHSEGHLPIMNLEQEFALQSKKELVDAPDFTVDYECDDQFYNDLDLDELEAQAISLHKKKLDMSTQKKDTNPFYNDLDLDELEAQAISLHKKKLDMSTQKKDTNPLPHSPKEDSFWSPSFDLGI | 843 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc18g00022 | 843 | Gene3D | - | 7 | 137 | IPR027417 | - | |
Stsc18g00022 | 843 | MobiDBLite | consensus disorder prediction | 558 | 615 | - | - | |
Stsc18g00022 | 843 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 9 | 179 | IPR001650 | - | |
Stsc18g00022 | 843 | Pfam | Helicase conserved C-terminal domain | 20 | 126 | IPR001650 | - | |
Stsc18g00022 | 843 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 20 | 135 | IPR027417 | - | |
Stsc18g00022 | 843 | MobiDBLite | consensus disorder prediction | 697 | 713 | - | - | |
Stsc18g00022 | 843 | MobiDBLite | consensus disorder prediction | 694 | 713 | - | - | |
Stsc18g00022 | 843 | PANTHER | FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER | 17 | 789 | - | - | |
Stsc18g00022 | 843 | FunFam | ATP-dependent RNA helicase, putative | 10 | 142 | - | - | |
Stsc18g00022 | 843 | MobiDBLite | consensus disorder prediction | 520 | 535 | - | - | |
Stsc18g00022 | 843 | MobiDBLite | consensus disorder prediction | 812 | 843 | - | - | |
Stsc18g00022 | 843 | SMART | helicmild6 | 37 | 127 | IPR001650 | - | |
Stsc18g00022 | 843 | MobiDBLite | consensus disorder prediction | 520 | 639 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc18g00022 | Stsc-Chr18 | 221310 | 226306 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc18g00022 | 68 | 142 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 31.461 | 8.51e-07 | 50.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc18g00022 | K10896 | - | vra:106756418 | 764.607 |