Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc189g00015 ATGACTTCTTTCATAGGAGTTTCTTCCATATACCAAACTCCCTCTACAACTCTCGAACTTCACAAGAGGCCACCTCTTCCTACTTCCTCTCTTTCCTTGGACACCAAGTCCCACTTCAACAACGTTCTCAGAGCACACCTTTCTACTAACAATGCCAAGGGAACTTTTAAGCCTACTCTTACTTTTGTTCCTTCTGCCATTGCCACCCCTAATTCTTCCGTCCTCAGCGAAGAAGCCTTCAAGGGTATAGGCAGCGGCGATGACTTCCTTGAAAACGACGACGACGACGACTTTCTCGGCGGCTTTGGCTCTGAAACCGACGATGGCTCTGCGGCTCCTAGCTCTGAAGAACTCGACGTTGCCAAGCTTGGCCTTCCTTCGCGCCTCGTTGATTCACTCAGCAAGCGTGGGATTACGGAGCTTTTCCCCATTCAGACTGGGACTGGCAAGACATTAGCATTTGGGATTCCCATTATTAAAGGCCTCACTGAAGATGAACAATCAAGTTCTCTCAGACGGGGTCGTCTTCCTAGAGTCTTGGTCCTTGCACCTACCAGGGAGCTAGCAAAGCAAGTGGAGAAGGAGATAAAGGAGTCTGCACCTTATCTGAGCACGGTTTGTGTTTATGGGGGTGTTTCCTATGTTACTCAACAAAGTGCACTTTCGCGTGGAGTCGATGTAGTTGTTGGGACGCCTGGTAGAATAATTGACCTAATCAATGGGAACAGCCTTAGACTGAATGAAGTTCAGTACCTGGTCCTCGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTAATATTGGAAAAGCTCCCATCAGAGAGGCAGAGCATGCTTTTTTCTGCAACTATGCCAACTTGGGTGAAGAAATTGGCACGCAAGTATTTGGACAATCCATTGACAATAGATCTGGTTGGCGATGAAGAAGAAAAGCTCGCGGAAGGGATAAAACTTTACGCTCTATCAGCAACGGCCACTTCAAAGAGGACAATTCTTTCCGATCTTATAAGTGTTTATGCCAAGGGTGGGAAGACTATAGTTTTTACGCAGACAAAAAGAGATGCTGATGAAGTATCGTTGGCATTAACAAATAGTATAATGTCTGAAGCATTGCATGGTGATATATCTCAGCATCAAAGAGAGAGAACATTGAATGGTTTTCGACAAGGAAAATTTACAGTTCTTGTTGCCACTGATGTTGCAGCACGTGGACTTGATATTCCTAATGTTGATTTGATTATTCATTATGAGCTGCCCAATGATCCGGAGACTTTTGTACACCGCTCTGGTCGTACTGGGCGTGCAGGAAAACAAGGTACTGCCATTCTTATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTGGAGCGTGATGTAGGCTGCAAATTTGAATTTATCAGTCCACCGGGTATACAAGAGATTTTGGAGGCATCTGCTGAGCAAGCTGTTGCCACGCTCAATAGGGTTCATCCTGAGTCTGTTGAGTTTTTTACACCAACTGCACAAAAACTGATTGAAGAACAGGGAACAAGTGCCCTTGCAGCCGCACTAGCACAAATGAGTGGATTCTCTCGTCCTCCATCATCCCGGTCATTAATCAACCATGAACAGGGATGGGTTACATTGCAGTTGATCCGAGATTCAGATGGTAGAAGATACTTCTCGGCAAGATCAGTCACTGGGTTTCTTGCTGATGTTTATTCTCCAGCTGCCGATGAAGTTGGAAAAATACATTTAATTGCAGATGAAAGGGTTCAAGGGGCCGTCTTTGATCTTCCAGAGGAAATTGCTAAAGAGTTACTTAACAGGGACATACCACCTGGAAACACTATAACCAAGGTTACCAAGTTACCTGCTTTGCAAGATGATGGGCCAGCAAGTGATTTCTATGGAAAGTTCTCTGACAGAGATCGTAGTAACCGAAGAGGTTCTAGTTCTGGTTCTAGGGATCGGAGAGGCGGTTTCAGAAGCTCACGGGGATCCTATGGGGGGCGCGACTCTGATGATGATTTTGGTGATTCATATAGGAGAGGCAGTAGAAGTAATAATAATAAAACTGGCAGCAGCTGGTCTCGAGCTGGAAGATCTTCCAGCTCGGATGATTGGCCAATTGGCGGTAGACGATCATCGGGCAGATCTTCATCATCAGAGAGAGGTGGTTTTGGAGGGTCATGTTTTAACTGTGGGGAGTCTGGTCATCGAGCATCAGATTGTCCAAACAAGCGCAGCTTCTTTTAG 2256 0.4592 MTSFIGVSSIYQTPSTTLELHKRPPLPTSSLSLDTKSHFNNVLRAHLSTNNAKGTFKPTLTFVPSAIATPNSSVLSEEAFKGIGSGDDFLENDDDDDFLGGFGSETDDGSAAPSSEELDVAKLGLPSRLVDSLSKRGITELFPIQTGTGKTLAFGIPIIKGLTEDEQSSSLRRGRLPRVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLRLNEVQYLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPTWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLYALSATATSKRTILSDLISVYAKGGKTIVFTQTKRDADEVSLALTNSIMSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILMYTSSQRRTVRSLERDVGCKFEFISPPGIQEILEASAEQAVATLNRVHPESVEFFTPTAQKLIEEQGTSALAAALAQMSGFSRPPSSRSLINHEQGWVTLQLIRDSDGRRYFSARSVTGFLADVYSPAADEVGKIHLIADERVQGAVFDLPEEIAKELLNRDIPPGNTITKVTKLPALQDDGPASDFYGKFSDRDRSNRRGSSSGSRDRRGGFRSSRGSYGGRDSDDDFGDSYRRGSRSNNNKTGSSWSRAGRSSSSDDWPIGGRRSSGRSSSSERGGFGGSCFNCGESGHRASDCPNKRSFF 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc189g00015 751 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 120 663 - -
Stsc189g00015 751 Gene3D - 723 749 - -
Stsc189g00015 751 Pfam Helicase conserved C-terminal domain 334 441 IPR001650 -
Stsc189g00015 751 Pfam GUCT (NUC152) domain 528 627 IPR012562 GO:0003723|GO:0004386|GO:0005524
Stsc189g00015 751 CDD DEADc 129 308 - -
Stsc189g00015 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 462 IPR027417 -
Stsc189g00015 751 SMART c2hcfinal6 730 746 IPR001878 GO:0003676|GO:0008270
Stsc189g00015 751 MobiDBLite consensus disorder prediction 683 727 - -
Stsc189g00015 751 MobiDBLite consensus disorder prediction 610 751 - -
Stsc189g00015 751 ProSiteProfiles Zinc finger CCHC-type profile. 731 746 IPR001878 GO:0003676|GO:0008270
Stsc189g00015 751 MobiDBLite consensus disorder prediction 96 116 - -
Stsc189g00015 751 CDD SF2_C_DEAD 333 450 - -
Stsc189g00015 751 SUPERFAMILY Retrovirus zinc finger-like domains 712 749 IPR036875 GO:0003676|GO:0008270
Stsc189g00015 751 SMART helicmild6 361 441 IPR001650 -
Stsc189g00015 751 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 336 481 IPR001650 -
Stsc189g00015 751 CDD GUCT_Hera 535 614 - -
Stsc189g00015 751 Pfam Zinc knuckle 730 746 IPR001878 GO:0003676|GO:0008270
Stsc189g00015 751 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 131 307 IPR014001 -
Stsc189g00015 751 SMART ultradead3 137 324 IPR014001 -
Stsc189g00015 751 Gene3D - 324 528 IPR027417 -
Stsc189g00015 751 Gene3D - 119 311 IPR027417 -
Stsc189g00015 751 MobiDBLite consensus disorder prediction 635 682 - -
Stsc189g00015 751 FunFam Nucleolar RNA helicase II 329 519 - -
Stsc189g00015 751 Pfam DEAD/DEAH box helicase 144 296 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc189g00015 Stsc-Chr189 70015 74393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc189g00015 136 463 Eukaryotic Initiation Factors Gene Family AT1G72730 38.872 7.53e-60 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc189g00015 - - pcin:129296705 1061.98