Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc189g00001 ATGGCCTCTTCATTTTCAATGCAGTTGCTCCATTCCCAGAACCCTCTTCCTTGCTTTCACCATATCCAGGGTAATTTTGGCCAAGATGTGGCTAAGGCTCTTAGGCCTAGTATGGTATGTAGCAGTAGCAGATCAAAGCTTGGTCATAGCAAAGCATTGGCATCAAGATCACATTATGCCTTAAGGTTTTCTGTTTCGCAACAATCCGATGCAAAATCGGTCAGATATAGGACAATGTCCTGTGTCAATGCTACAGAAAACAATGTTGTAGAGCTACAAGCCAAAGTGACAAACAAGTGTTTCTTTGATGTAGAAGTTGGGGGTGAACCTGTGGGCAGGATTGTTTTGGGCCTATTTGGAGAGGTTGCTCCTAAAACAGTTGAGAACTTCCGTGCTTTGTGCACAGGAGAGAAAGGATATGGTTACAAAGGATGCTCCTTCCATCGTATAATCAAAGAATTCATGATTCAAGGAGGGGACTTTACTGAAGGAGATGGAACTGGTGGAATTAGCATCTATGGTTCCAGTTTTGAAGATGAGAGTTTTGCCTTGAAGCACGTTGGTCCTGGGGTTTTGAGCATGGCAAATGCTGGTCTTAACACCAATGGCAGTCAATTTTTTATTTGCACTGTAAAGACTCCTTGGCTAGACAATCGCCACGTGGTGTTTGGACACGTCATCGATGGGATGGATGTGGTGAAGACACTTGAATCCCAAGAGACAAGCAGAATGGATATCCCTCGGAAGCCTTGCAGAATTGTTAACTGCGGCCAACTTCCCATGGATGGTTGA 792 0.4432 MASSFSMQLLHSQNPLPCFHHIQGNFGQDVAKALRPSMVCSSSRSKLGHSKALASRSHYALRFSVSQQSDAKSVRYRTMSCVNATENNVVELQAKVTNKCFFDVEVGGEPVGRIVLGLFGEVAPKTVENFRALCTGEKGYGYKGCSFHRIIKEFMIQGGDFTEGDGTGGISIYGSSFEDESFALKHVGPGVLSMANAGLNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVKTLESQETSRMDIPRKPCRIVNCGQLPMDG 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc189g00001 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 IPR002130 GO:0000413|GO:0003755
Stsc189g00001 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 205 217 IPR002130 GO:0000413|GO:0003755
Stsc189g00001 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 190 205 IPR002130 GO:0000413|GO:0003755
Stsc189g00001 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 218 233 IPR002130 GO:0000413|GO:0003755
Stsc189g00001 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 147 159 IPR002130 GO:0000413|GO:0003755
Stsc189g00001 263 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 142 159 IPR020892 GO:0003755|GO:0006457
Stsc189g00001 263 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 101 258 IPR002130 GO:0000413|GO:0003755
Stsc189g00001 263 Gene3D - 84 262 IPR029000 -
Stsc189g00001 263 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 99 259 - -
Stsc189g00001 263 SUPERFAMILY Cyclophilin-like 94 259 IPR029000 -
Stsc189g00001 263 FunFam Peptidyl-prolyl cis-trans isomerase 85 263 - -
Stsc189g00001 263 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 102 257 IPR002130 GO:0000413|GO:0003755
Stsc189g00001 263 CDD cyclophilin_ABH_like 99 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc189g00001 Stsc-Chr189 737 3126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc189g00001 112 256 U-box Gene Family AT5G67530 43.836 2.36e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc189g00001 K03768 - gmx:100785805 419.853