Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc188g00002 ATGTCTGCCATGGAAATTGCTTCAAAGCTTCCAATTTCAGATATTGATATGGCGGCAAAGAGGCTGGAGCGCATGTTACCTTCATTGGCAAGTCACTCGCTTCTTGAATGCTCTATTCGGACCAACCAAGATGGCAGCAAAGAGAGAGTTTATGGTCTCTCAAACGTTGGTGCCTACTTCATCATCAATAATTCCTCTAAAGGCTCAGTGGCTCCTCTATCTGTTCTCATTCATCGAGTATACGGTGACCTTTGGAAGGATGTAAAAGACGCAATTTTGGATCCAAATAACAATGATCATTTTGGAAAAGTTTATGGGATGCCAGCATTCGAATATATGAAGAGAAATAAAGAAATGAGCCATGTTTTTGATCAAACAATGGCCCATTCTGGCCCACTGGGAATGAAAAGGGTCATAAACCTGTACAATGGGTTTGAGGGACTGACAACATTGGTTGATGTTGGAGGTGGAATAGGACAAGCCTTAAGCTTGATTATTTCTGCGTTTCCTTCAATTAAAGGAATTAACTTTGATATGCCTCATGTTGTGAAAAACGCACCACCTTATGAAGGGATAGAGCACGTTGGAGGAGACATGTTCGAAAGTATTCCAAAGGGTGATGCCATTATGCTAAAGCATGTGTGTCATAATTGGTCTGACAAAGAATGTGTGAAATTCCTGAGGAACTGCTACGAGGCCTTGCCACAAGATGGGAAGGTGATTGTTTTGGACTTCATAATGCCAGAAATTCCGAATTCGAGCAGTGCATCAAAACATGCTTGCGATATGGACTACCTCATGTTTATAATTCATGGTGGAAAAGAGAGAACTCAGAAAGAATTTGAGAGGCTATGTATCAACTCTGGATTTTCCAGATTCCAACTTGCTTGCCCTACTTCTTTAACTGCGTTTGGAGTCATGGAATTTTACAAATAA 936 0.4092 MSAMEIASKLPISDIDMAAKRLERMLPSLASHSLLECSIRTNQDGSKERVYGLSNVGAYFIINNSSKGSVAPLSVLIHRVYGDLWKDVKDAILDPNNNDHFGKVYGMPAFEYMKRNKEMSHVFDQTMAHSGPLGMKRVINLYNGFEGLTTLVDVGGGIGQALSLIISAFPSIKGINFDMPHVVKNAPPYEGIEHVGGDMFESIPKGDAIMLKHVCHNWSDKECVKFLRNCYEALPQDGKVIVLDFIMPEIPNSSSASKHACDMDYLMFIIHGGKERTQKEFERLCINSGFSRFQLACPTSLTAFGVMEFYK 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc188g00002 311 Gene3D Vaccinia Virus protein VP39 120 297 IPR029063 -
Stsc188g00002 311 Gene3D - 1 138 IPR036388 -
Stsc188g00002 311 CDD AdoMet_MTases 150 247 - -
Stsc188g00002 311 Pfam O-methyltransferase domain 85 291 IPR001077 GO:0008171
Stsc188g00002 311 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 311 IPR016461 GO:0008168
Stsc188g00002 311 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 76 300 IPR029063 -
Stsc188g00002 311 SUPERFAMILY "Winged helix" DNA-binding domain 1 62 IPR036390 -
Stsc188g00002 311 PIRSF O-mtase 1 311 IPR016461 GO:0008168
Stsc188g00002 311 PANTHER O-METHYLTRANSFERASE 1 302 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc188g00002 Stsc-Chr188 20279 21506 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc188g00002 1 306 Monolignol Biosynthesis Gene Families AT5G54160 49.026 2.66e-96 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc188g00002 - - aip:107621172 528.865