Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc188077g00001 CTCGACGGCATAATCAATCGCCTCCTGGAAGTTCGTGGCCGTCCCGGCAAGCAGGTTCAGCTCTCCGAGTCCGAGATCCGCCAGCTCTGCCTCGTTTCCAGAGACATTTTCTTGCAACAGCCTAATTTATTGGAACTCCAAGCTCCTATTAAGATTTGCGGGGATGTACATGGCCAATACTCCGATCTTCTACGGCTTTTCGAGTACGGCGGATTACCGCCCGACGCCAACTACTTGTTTTTGGGGGATTACGTGGATCGAGGCAAGCAGAGTCTAGAAACAATTTGCCTTCTTCTTGCTTATAAAATCAAATATCCTGAGAATTTCTTCCTTTTGAGGGGAAATCACGAATGTGCTTCTATCAACCGGATATACGGTTTTTATGACGAATGTAAGAGGAGGTTTAATGTTAGTTTATGGAAGACTTTCACCGAATGCTTCAATTGCCTCCCCGTCTCCGCCCTTATCGACGATAAGATTTTGTGTATGCACGGTGGACTCTCTCCCGACTTGCATGATTTGGATCAGATTAGGAATCTCCATCGCCCTACTGATGTGCCTGACACTGGTTTGCTCTGTGATCTTCTTTGGTCTGACCCTGGCAAAGATGTTCAAGGTTGGGGAATGAATGACAGGGGAGTTTCTTATACATTTGGTGCTGATAAAGTCTCCGAGTTCCTCGAGAAACATGATCTCGATCTTATATGCCGTGCTCATCAGGTTGTGGAGGACGGATACGAGTTCTTTGCCAATCGACAGCTTGTGACGATATTTTCAGCACCTAATTATTGTGGGGAGTTTGACAATGCTGGTGCCATGATGAGTGT 827 0.4655 LDGIINRLLEVRGRPGKQVQLSESEIRQLCLVSRDIFLQQPNLLELQAPIKICGDVHGQYSDLLRLFEYGGLPPDANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVSLWKTFTECFNCLPVSALIDDKILCMHGGLSPDLHDLDQIRNLHRPTDVPDTGLLCDLLWSDPGKDVQGWGMNDRGVSYTFGADKVSEFLEKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc188077g00001 276 ProSitePatterns Serine/threonine specific protein phosphatases signature. 112 117 IPR006186 GO:0016787
Stsc188077g00001 276 Pfam Serine-threonine protein phosphatase N-terminal domain 1 47 IPR031675 -
Stsc188077g00001 276 CDD MPP_PP1_PPKL 1 276 - -
Stsc188077g00001 276 PRINTS Serine/threonine phosphatase family signature 253 269 IPR006186 GO:0016787
Stsc188077g00001 276 PRINTS Serine/threonine phosphatase family signature 145 171 IPR006186 GO:0016787
Stsc188077g00001 276 PRINTS Serine/threonine phosphatase family signature 174 201 IPR006186 GO:0016787
Stsc188077g00001 276 PRINTS Serine/threonine phosphatase family signature 231 251 IPR006186 GO:0016787
Stsc188077g00001 276 PRINTS Serine/threonine phosphatase family signature 49 76 IPR006186 GO:0016787
Stsc188077g00001 276 PRINTS Serine/threonine phosphatase family signature 78 105 IPR006186 GO:0016787
Stsc188077g00001 276 PRINTS Serine/threonine phosphatase family signature 111 135 IPR006186 GO:0016787
Stsc188077g00001 276 SMART pp2a_7 21 276 IPR006186 GO:0016787
Stsc188077g00001 276 Gene3D - 6 276 IPR029052 -
Stsc188077g00001 276 Pfam Calcineurin-like phosphoesterase 49 241 IPR004843 GO:0016787
Stsc188077g00001 276 SUPERFAMILY Metallo-dependent phosphatases 13 274 IPR029052 -
Stsc188077g00001 276 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 5 276 - -
Stsc188077g00001 276 FunFam Serine/threonine-protein phosphatase 46 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc188077g00001 Stsc-Chr188077 1 1085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc188077g00001 28 237 Calmodulin-binding Proteins AT5G63870 29.200 3.19e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc188077g00001 K06269 - nnu:104600861 548.895