Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc187851g00001 ATGCGGGAGTGTGAAGAAGTGATTCTCAATGATCCATTCCTTGGAAAACGAGTTGAAGAAAGCAACTTTTCTACTGTACCATTGAGGGATGAGTTCCTTGAAAATGCTAGGCTATTCATCTTTGAGACATACTGCAGAATACACCAGCGTATTGACATGGCAGTTCTCGCTGAGAAGTTAAATCTGAATTATGAGGAGGCCGAGAGGTGGATTGTGAACCTCATCCGCAGCTCAAAGCTTGATGCCAAAATTAACTCTCAAACAGGAACAGTTATCATGGAACCCAATCATCCCAA 296 0.4257 MRECEEVILNDPFLGKRVEESNFSTVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAERWIVNLIRSSKLDAKINSQTGTVIMEPNHP 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc187851g00001 98 Pfam PCI domain 2 94 IPR000717 -
Stsc187851g00001 98 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 97 IPR016650 GO:0003743|GO:0005737|GO:0005852
Stsc187851g00001 98 ProSiteProfiles PCI domain profile. 1 98 IPR000717 -
Stsc187851g00001 98 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 27 98 IPR000717 -
Stsc187851g00001 98 SUPERFAMILY "Winged helix" DNA-binding domain 27 96 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc187851g00001 Stsc-Chr187851 1 1157 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc187851g00001 1 98 Eukaryotic Initiation Factors Gene Family AT3G57290 86.735 1.11e-59 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc187851g00001 K03250 - gmx:100797748 195.282