Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1876g00003 ATGCGAACAGGGAAGGGAGCGGCGCGGCTTGAGGTCTCATTGGTGGAGGATCCACAATACGGCGGCGGGCTCAGCAGCAGGGTCTTCTCTTCTGTTACATTCTGCACCATCTTTAAGAACATAGCTTCCAACCTTACTGGACCGTCTTCTTTGGATGAGGAGCTCAAAGACGAAATAAATCTAACGATAAGGCTATACAGCGAGGCTGCAGGCAGATGGCTCAAGCACACACGCGTACCGAAGATGAAGGACAATGCCCCAAATAATGTTCCACCAGGAATTGTTGTTGACACCCAAATCTGTCATCCCAAGAACAATGACTTTTACATGTGTGCTCAGGCTGGGATGATTGGAACAACTCGACCAATTCATTACCAAGTTTTGCATGTTGAAATTTGGTTCTCTGGTGATGATTTGCAAGAATTAGTTCATTCTCTTTCTTATGCCTACCAGAGGAGCACCACTGCCATATCAATAGTTGGTCCAATTTACTATGCTCACTTAGCAGCTGCCCAAATGGGACAGTTCATCATACTTAACTGTCTGAGACTTCTTCCAGTCATGGCGGAACTACAATTTTGGGTGCTATTCATGTTCCTCGCCCCAAAACACGATGAGAACTCCTTGGCTACCAGTCCTCCTATTCAAAGTGATGAAGATATTGTTGATATTAAGCCTCTTCAAGTTTCTAGAGAGGTTTACATGGCATCGATTGTGCCTATCAATTCTGGTCCGAGAGATTGGTACTACAAGGCTTGCAAAAAATGTTCTAAGAAGGTTGATATTAGAAAAGGACAGTAG 801 0.4457 MRTGKGAARLEVSLVEDPQYGGGLSSRVFSSVTFCTIFKNIASNLTGPSSLDEELKDEINLTIRLYSEAAGRWLKHTRVPKMKDNAPNNVPPGIVVDTQICHPKNNDFYMCAQAGMIGTTRPIHYQVLHVEIWFSGDDLQELVHSLSYAYQRSTTAISIVGPIYYAHLAAAQMGQFIILNCLRLLPVMAELQFWVLFMFLAPKHDENSLATSPPIQSDEDIVDIKPLQVSREVYMASIVPINSGPRDWYYKACKKCSKKVDIRKGQ 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1876g00003 266 Gene3D - 72 181 IPR036397 GO:0003676
Stsc1876g00003 266 Pfam Piwi domain 75 177 IPR003165 GO:0003676
Stsc1876g00003 266 SMART Piwi_a_2 1 178 IPR003165 GO:0003676
Stsc1876g00003 266 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 76 177 - -
Stsc1876g00003 266 ProSiteProfiles Piwi domain profile. 64 178 IPR003165 GO:0003676
Stsc1876g00003 266 SUPERFAMILY Ribonuclease H-like 76 175 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1876g00003 Stsc-Chr1876 6803 9189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1876g00003 72 170 Eukaryotic Initiation Factors Gene Family AT5G43810 48.485 3.09e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1876g00003 K11593 - ini:109182132 157.532