Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc186350g00001 ATGCCTGGCCTTAAAGTTCATCCATCATGCACAGAGTCAGAAACTTTCGTGGAGATGGATCCAAGCGGAAGATACGGGCGTTATAAGGAGCTTCTTGGATCTGGTTCTGTTAAGAGAGTTTACAGAGCATTTGACAAACAAGAAGGAATTGAAGTTGCATGGAACCAAGTGAAGCTCAACAACTTCATGGACGACCCTATCATGCTTCACAGGCTTCACTCTGAAGTCATCTTGCTAAGAGACTTGTCCCACGATCACGTCATCTCCCTTTCTGCCTTCTGGAATGATGACGTCACTCACACTTTGAATTTCATCACTCAAGTATGCAGCAGTGGCAGTCTGAGGGACTTCAGGAAGAGGCACAAGCATGTTTCCATCAAGGCTATCAAGAAATGGTGTAAGCAGATTCTACAAGGTTTGGATTATTTGCACAACCATGATCCCTGCATCATCCACAGAGACCTCAACTGCAGCAATGTCTTTATCAATGGAAATACCGGCCAGCTTAAGATTGGTGACTTGGGGTTGGCGGCCATTGTGGGGAGGAGCCACTCCGCGCATTCGGTTCTTGGGACGCCGGAGTTCATGGCGCCAGAGTTGTACTCGGAGAATTACACGGAGAAGGTGGATATATACTCATTTGGGATGTGTGTGTTGGAGATGGTGACAAGAGAGATTCCGTATTGTGAGTGTGAGAGTGTTGTCAAGATATACAAGAAGGTGACTTCAGGATTGAGGCCTGACTCACTGAACAAGATTAAGAATGAAGAGGTGAAGTCATTCATTGAGAAGTGCATTGCTCATCACCCAAATGCAAGACCTTCTGCTGCACAGCTTCTTAACGACCCTTTCTTTCATGAGCTTCTTTAA 870 0.4586 MPGLKVHPSCTESETFVEMDPSGRYGRYKELLGSGSVKRVYRAFDKQEGIEVAWNQVKLNNFMDDPIMLHRLHSEVILLRDLSHDHVISLSAFWNDDVTHTLNFITQVCSSGSLRDFRKRHKHVSIKAIKKWCKQILQGLDYLHNHDPCIIHRDLNCSNVFINGNTGQLKIGDLGLAAIVGRSHSAHSVLGTPEFMAPELYSENYTEKVDIYSFGMCVLEMVTREIPYCECESVVKIYKKVTSGLRPDSLNKIKNEEVKSFIEKCIAHHPNARPSAAQLLNDPFFHELL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc186350g00001 289 Pfam Protein kinase domain 29 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc186350g00001 289 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Stsc186350g00001 289 Gene3D Transferase(Phosphotransferase) domain 1 109 288 - -
Stsc186350g00001 289 FunFam Probable serine/threonine-protein kinase WNK1 11 107 - -
Stsc186350g00001 289 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 287 - -
Stsc186350g00001 289 ProSiteProfiles Protein kinase domain profile. 26 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc186350g00001 289 PIRSF ILK 32 282 - -
Stsc186350g00001 289 FunFam probable serine/threonine-protein kinase WNK9 109 288 - -
Stsc186350g00001 289 SUPERFAMILY Protein kinase-like (PK-like) 19 285 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc186350g00001 Stsc-Chr186350 254 1123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc186350g00001 12 289 MAP Kinase Kinase Kinase AT5G55560 69.784 4.58e-154 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Stsc186350g00001 Pkinase 4.5e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc186350g00001 K08867 - gmx:100782039 440.269