Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc186080g00001 ATGAGGATGTTTTCTAAGAAGGGAGGCCAAGATCTTTACATAAGAGTCCCTGGTTCAGAAGGTGTAGTAGCAAGAAATATATGCAAAAATAAGCTAAGTCAGGAAGATGTGGACCTACCAATATTCGATTTTTCAGTCATAGCTAAAGCTACAGGAAACTTTGCAAACAATAAAAAACTTGGAGAAGGTGGTTTTGGACCGGTCTATAAGGGCATACTTGAAGATGGCCGAGAATTAGCTGTGAAAAGGCTTTCGGAAAGGTCTAGACAAGGGCAAGAAGAGTTCAAAAATGAAGTGGTGTTGATAGCTAAACTTCAACATCGTAATCTTGTGAAACTTCTTGGTTGTTGTATTCAAGATGAAGAAAAAATATTGATTTATGAGTACATGCCTAACAAAAGCTTAGACCACTTTATTTCCGATGAAAGTAGACGGAAGTTGCTAGATTGGCTAAAGCGTTTTAACATTATCAATGGCATTGCTCGAGGACTTTTTTATCTTCATCAAGATTCTATATTGAGGATAATTCATAGAGATCTAAAAACCAGCAATATTTTGTTAGATGCGAATTTTAATCCCAAGATATCAGATTTTGGTTTAGCTCGAACTTTCTTAGATGATCAAGTTGAGGGAAACACAAATAAGATTGCTGGAACATACGGTTACATGCCTCCCGAATATGCAGTACATGGACAATTTTCTATGAAATCAGATGTTTTTAGTTATGGTGTAATAATATTAGAGTTGATAAGTGGGAAGAAGAATAGAGAATTCTCAAACCCTGACAACTACCTTAATCTTCTTGGGCATGCATGGAGATTATGGACCAATGAGAGGCCATTGGAAGTGTTGGATGAAGTATTAAGGGAAAGGTGCAATCCTGCTGAAGTCATAAGATGCATACAGGTAGGTTTATTATGTGTACAACAAAGACCAGATGATAGGCCTAATATGTTATCCGTGGTTCTAATGCTAAATGGTGAGAAATTGTTGCCCCAACCGAAATGTCCTGCATTTTATGTGAGTTGTAGTAAGAAACTTGAAGAAAAATCTTTACTGCCTAACGCAAAGTTCTCAGCCA 1081 0.3691 MRMFSKKGGQDLYIRVPGSEGVVARNICKNKLSQEDVDLPIFDFSVIAKATGNFANNKKLGEGGFGPVYKGILEDGRELAVKRLSERSRQGQEEFKNEVVLIAKLQHRNLVKLLGCCIQDEEKILIYEYMPNKSLDHFISDESRRKLLDWLKRFNIINGIARGLFYLHQDSILRIIHRDLKTSNILLDANFNPKISDFGLARTFLDDQVEGNTNKIAGTYGYMPPEYAVHGQFSMKSDVFSYGVIILELISGKKNREFSNPDNYLNLLGHAWRLWTNERPLEVLDEVLRERCNPAEVIRCIQVGLLCVQQRPDDRPNMLSVVLMLNGEKLLPQPKCPAFYVSCSKKLEEKSLLPNAKFSA 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc186080g00001 360 ProSiteProfiles Protein kinase domain profile. 54 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc186080g00001 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Stsc186080g00001 360 SUPERFAMILY Protein kinase-like (PK-like) 37 344 IPR011009 -
Stsc186080g00001 360 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 29 346 - -
Stsc186080g00001 360 Gene3D Phosphorylase Kinase; domain 1 20 129 - -
Stsc186080g00001 360 Pfam Protein tyrosine and serine/threonine kinase 57 322 IPR001245 GO:0004672|GO:0006468
Stsc186080g00001 360 FunFam - 130 334 - -
Stsc186080g00001 360 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 129 - -
Stsc186080g00001 360 SMART serkin_6 54 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc186080g00001 360 CDD STKc_IRAK 60 327 - -
Stsc186080g00001 360 Gene3D Transferase(Phosphotransferase) domain 1 130 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc186080g00001 Stsc-Chr186080 2 2097 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc186080g00001 42 343 Receptor kinase-like Gene Family AT4G23140 57.929 3.26e-132 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc186080g00001 PK_Tyr_Ser-Thr 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc186080g00001 - - adu:107464241 535.798