Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc185673g00001 ATGAGCAAGCCCATCAATGGAGTAAGAACAGTAGCATCAAGGAACTGGCAATATACCGATGTCGAAGTCTTAGAGATCACCGAAAACTTCAAGACGGTCATCGGCAAAGGAGGATTTGGAACTGTGTACATTGGTAAGACAAAAAATGGAAACCAAGTTGCAGTTAAGGTCTTTTCTCCATCATCATCATCACAGGGACCAAAGGAATTTCAGACCGAGGCTGAGCTCTTGATGACTGTCCATCACAAAAATTTGGTATCATTCATTGGTTACTGTGATGATGATAATAGAATGGCACTCATATATGAATACATGGCTAATGGCAACCTAAAAGATTATCTCTCAGTTAGAAACTCACATAGCATGAGCTGGGAAAGGCGAATTCAGATTGCGATCGACGCTGCAGAAGGACTGGATTACCTACACCATGGATGCAAGCCACCTATAATACACAGAGATGTCAAGTCGGCTAACATTCTTCTAAACGAAGATTTAGAAGCAAAGATAGCTGATTTCGGCCTCTCCAGGGTGTTTCGCAACGAAAAGCAAAATGCAGTATCAGCAGTCCCTCAGAATGATAACAAAAATGCAGAATCAGCAGTCATGGGAACCACAGGTTACCTTGATCCAGAATACTTCAAGTTGAGGAACTTGAATGAGAAGAGTGACATCTACAGCTTTGGAATTGTTCTATTGGAACTAATCACAGGGCAGACGGCCGTATTAAAAGGCGAGCAACGAATGCACATCCTTGATTGGGTAAGGCCTGAGCTTGAAAGTAAAGATTTGAGGAGGGTAATGGATCCAAGGCTGCAAGGGGAGTATGATGAAAATTCTGCATGGAAAGCATTAGGAATAGCAATATCATGCAGTGCATCAACCTCTATTCAGAGGCCTACAATGAGTGTTGTGTTATCAGAGTTAAAGCAGTGTTTGAAGATGGAATTTCCTGGTGGTTCTAGTGAAGCAATTGTGGTGCCAAGAAATTTGTTTTGTGAATTTTATAGCTCATCTGAAGCATATTCCATGGATAGTGAATCAATCACCTATCCTTTCCCAAGATAA 1065 0.415 MSKPINGVRTVASRNWQYTDVEVLEITENFKTVIGKGGFGTVYIGKTKNGNQVAVKVFSPSSSSQGPKEFQTEAELLMTVHHKNLVSFIGYCDDDNRMALIYEYMANGNLKDYLSVRNSHSMSWERRIQIAIDAAEGLDYLHHGCKPPIIHRDVKSANILLNEDLEAKIADFGLSRVFRNEKQNAVSAVPQNDNKNAESAVMGTTGYLDPEYFKLRNLNEKSDIYSFGIVLLELITGQTAVLKGEQRMHILDWVRPELESKDLRRVMDPRLQGEYDENSAWKALGIAISCSASTSIQRPTMSVVLSELKQCLKMEFPGGSSEAIVVPRNLFCEFYSSSEAYSMDSESITYPFPR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc185673g00001 354 ProSitePatterns Protein kinases ATP-binding region signature. 34 56 IPR017441 GO:0005524
Stsc185673g00001 354 ProSiteProfiles Protein kinase domain profile. 28 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc185673g00001 354 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 105 317 - -
Stsc185673g00001 354 PANTHER OS07G0107800 PROTEIN-RELATED 14 312 - -
Stsc185673g00001 354 Pfam Protein tyrosine and serine/threonine kinase 30 307 IPR001245 GO:0004672|GO:0006468
Stsc185673g00001 354 Gene3D Transferase(Phosphotransferase) domain 1 106 318 - -
Stsc185673g00001 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Stsc185673g00001 354 CDD STKc_IRAK 34 310 - -
Stsc185673g00001 354 FunFam receptor-like protein kinase FERONIA 5 104 - -
Stsc185673g00001 354 SMART serkin_6 28 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc185673g00001 354 SUPERFAMILY Protein kinase-like (PK-like) 14 308 IPR011009 -
Stsc185673g00001 354 Gene3D Phosphorylase Kinase; domain 1 34 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc185673g00001 Stsc-Chr185673 131 2333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc185673g00001 17 316 Receptor kinase-like Gene Family AT4G29180 54.777 1.49e-114 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc185673g00001 PK_Tyr_Ser-Thr 5.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc185673g00001 - - lja:Lj0g3v0276029.1 514.227