Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc185452g00001 ATGACCTCCGTTTCGCGTAACCGTCCAAAGGACGGAATTACTCTTCTGTCCTTCTTCTTTCTCTTTCAACTCCTTCTCTTCCTTCCCTTCACCGGAGCAATATCCGATAACAACAACAACAACGACGAAAACAACTCTTACTACAACCGTTTCAGCCCTTCCATGGCGATCATAGTTGTAATCCTCATCTCCGCGCTCTTCCTCATGGGATTCTTCTCCCTCTACATCCGCCACTGCTCCGACTCTCCTTCCGCCAGCGTCCGCAACATCGCCGCCGGCATATCCCGCCGCGGACACCGAGGTCTCGACCGCGCCGTCATCGACTCCTTCCCAACGCTAGAGTACTCCGTCGTAAAAGTTCACAAGATCGGAAAGGGAGCTCTCGAATGCGCAGTGTGCCTCAACGAGTTTGAAGACACCGAAACGCTGCGTTTGATCCCCAAATGCGACCACGTGTTCCACCCTGAGTGCATCGACGAGTGGCTCGAGTCTCACACCACGTGTCCGGTTTGTAGAGCCAACCTCGTCCCACAGCCGGGAGACTCCGTTCGCGGCACTCCCGCAGCCGTCGTTGTTCCGGAGGCGACGAACGACGACTTGTCATCGCAGCGGGATTTGGAATCGCGGGACCAAAACGACGTCGTGGTTGCCGTGGAGCAAGAAAGTGAGAATCAAAATTTGGAGAGTAACAAGAATGAAAGGGAAAGTGTTGATGAACCGGAAGTGCTGCGTTTGAATATGAACCAGGGGCTGAACCGGAACCGAACCAGGGGCTCCCGGTCGGGGCGGCCAAGGAGATTTCCGAGATCGCATTCCACCGGGCACTCTCTGGTTCAACCGGGTGAGGACACAGAGCGGTTCACTCTAAGATTGCCTTTGGAAGTGTGGAAGAAGATTCTTGAACCTCAGTTGAACCGAGCAAGGAGCTTGGTTATTTTTCCAACGGAAGGGAGCTCAAGGAGGGGTTACCGAACTGGGGGTGGAGAAGGAAGTAGTAGGGGCCGGTCTTCAAGGCGGTTGGACCGGGGTTTTAAGTCGGACCGGTGGGTTTTCACTATGGCGCCGCCGTTTCTGGTTAGGGCGTTATCCATTAGGTCACCAAGGGTGGCTAATACCACTGCCGGCGGAAGTTCATCGGCAGCTCCTGCAGCTGCACCACAAGCTCCGACGGCAGCAGCAGCTACAGAAATAGACCGTTTACCGGTTTAA 1209 0.5492 MTSVSRNRPKDGITLLSFFFLFQLLLFLPFTGAISDNNNNNDENNSYYNRFSPSMAIIVVILISALFLMGFFSLYIRHCSDSPSASVRNIAAGISRRGHRGLDRAVIDSFPTLEYSVVKVHKIGKGALECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLESHTTCPVCRANLVPQPGDSVRGTPAAVVVPEATNDDLSSQRDLESRDQNDVVVAVEQESENQNLESNKNERESVDEPEVLRLNMNQGLNRNRTRGSRSGRPRRFPRSHSTGHSLVQPGEDTERFTLRLPLEVWKKILEPQLNRARSLVIFPTEGSSRRGYRTGGGEGSSRGRSSRRLDRGFKSDRWVFTMAPPFLVRALSIRSPRVANTTAGGSSSAAPAAAPQAPTAAAATEIDRLPV 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc185452g00001 402 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 37 251 - -
Stsc185452g00001 402 Pfam Ring finger domain 129 172 IPR001841 -
Stsc185452g00001 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 177 IPR013083 -
Stsc185452g00001 402 CDD RING-H2_EL5-like 129 172 - -
Stsc185452g00001 402 SMART ring_2 130 171 IPR001841 -
Stsc185452g00001 402 MobiDBLite consensus disorder prediction 317 339 - -
Stsc185452g00001 402 MobiDBLite consensus disorder prediction 370 402 - -
Stsc185452g00001 402 MobiDBLite consensus disorder prediction 226 241 - -
Stsc185452g00001 402 MobiDBLite consensus disorder prediction 220 283 - -
Stsc185452g00001 402 SUPERFAMILY RING/U-box 124 179 - -
Stsc185452g00001 402 FunFam E3 ubiquitin-protein ligase ATL6 91 178 - -
Stsc185452g00001 402 MobiDBLite consensus disorder prediction 370 384 - -
Stsc185452g00001 402 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Stsc185452g00001 402 Coils Coil 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc185452g00001 Stsc-Chr185452 525 2391 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc185452g00001 24 372 Rapid Response to Elicitors AT3G05200 44.134 2.04e-84 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc185452g00001 K10664 - gmx:100810865 416.387