Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1850g00002 ATGCACTTTTCTTGGCTAATCAAACATCAATTATTATGCATCATCATTGGTATCATAGCCTCAACCAAGGTTGGATGCTTTCAATTCAATTTCTCCTCCTTCCAACCCCTGGATGGAACCGATAAACTGTTGCTGATCAATAATGTCGCAGCCATATACTCCAACGCCCTCCAAGTAACCCCTGATTCGAATTCGATGCTTGATCGATCGGGGCGAGCTTTCTACAATAAGCCATTCAGATTATGGAGCAAAAAGAAGAATCAAACTGCAAGCTTCAATTCCACTTTTGTTCTTAACATCAATCCTCACACTTCCCCTGGTGGAGAAGGGTTGGCCTTCATCTTAACCGCGAACACCGCTCTCCCGGACAACAGTTCCGGAGAGTGGCTAGGAATTGTGAACGCCACAACCAATGGAACTTCTCAAGCTGGGATTCTTGCTGTGGAATTTGACACAAGAAAAAGTTTCACAGAAGATGGTCCTGATAACCACGTTGGGATTAACATAAACAGCATCAATTCTATCCAAAAAGTCCCATTGTTAAGCAAAGGGATCAATATCTCATCAGGTCTTAATGTGACAGTGAGAGTTGAGTATGTTAATTATAGTATATCGGTTTATGGATACATGACTGAAACATCAGCACAAGAGTTACTCTTAGTATCTTCACCCCTTAACCTTTCTTCCTATCTTGATGAAGAGGTTTATGTCGGTTTCTCCGCTTCAACGAGTAACTACACCGAGCTTAATTGTGTAATTAAATGGGAATTCAATGGTGAAGATATTATTCATGATAATAAGAGCCTGCTATGGGTTTGGATCATTGTTGCAACCGTGGTTGTTATTATGGTTGGTGGAGTGGTGTTTTTCTTGGTTTGGCGAAGGAAACACGGCGTGAGGACTCTGGGAGATGCATACCCGAGGATAGAGGATCAGATTCAGCACTCATCCATGGCTCCAAAGAAGTTCCGGTTAAAGGAAATTAAAAAAGCAACAGGTGGATTCAGCCTTCAAAACAAGCTTGGTGAAGGTGGTTTCGGAACAGTTTATAAGGGACTACTAGAAAACAAGGAGATAGCTGTGAAGAGTCACTCGAAGGATTCGCGACAAGGGAAGCAAGAATTTGTAGCAGAAGTCACAACAATTGGAAGCCTCCACCACAGGAATTTAGTGAAACTGATTGGTTGGTGCTATGAAAGCAGAGAGCTTCTTCTTATTTACGAGTACATGCCTAATGGAAGCCTAGACAAGTACCTATTTGATGAGCAAAATTTCGCCACTAACAATTCAACACTAAAATGGGAAACCAGACGCAGTGTGATATATGGAGTGGCTCAAGCATTGGAGTATCTGCACAATGGTTGTGAGAAGAGAGTGCTTCATAGAGACATCAAGGCCAGCAACATAATGTTGGATTCGGAATTCAATGCTAAGTTAGGAGATTTCGGATTGGCGCGAACTATTCAAAAGAAAAACGAAACTCATCATTCCACTAAGGAGATTGCAGGGACGCCAGGGTACATGGCTCCGGAAACATTCCTCATTGGAAGGGCGACGGTGGAAACAGATGTGTACGCGTTCGGCGTTCTTGTGTTGGAAGTTGTGTGTGGAAGAAGGCCGGGGAATGTGAACGGACAAGATGACTACAAGAACAACATTGCGTATTGGGTTTGGGAGCTTCATGGGAAGGGGAGAATAGTGAGTGCTTTGGACAAAAGGATAAGTAATGAAGAGATGAATGAAGAAGAAGTTTCTAGTGTTCTTGTTTTGGGGTTGGCTTGTTGCCATCCAAACCCGCACCATAGGCCTTCAATGAGAACTGTTCTGCAAATTCTGAACGGGGAAGCATCGCCGCCAGTGGTGCCTCAAGAGAGGCCTGCTTTTGTGTGGCCAGTTATGCCTCCATTTTTCAATGAAGGTGTAGATATCTCACTTCTTAATGGGCAAACTCCAATGTTCACTGAAATTACTTGTCGGTGA 1980 0.4328 MHFSWLIKHQLLCIIIGIIASTKVGCFQFNFSSFQPLDGTDKLLLINNVAAIYSNALQVTPDSNSMLDRSGRAFYNKPFRLWSKKKNQTASFNSTFVLNINPHTSPGGEGLAFILTANTALPDNSSGEWLGIVNATTNGTSQAGILAVEFDTRKSFTEDGPDNHVGININSINSIQKVPLLSKGINISSGLNVTVRVEYVNYSISVYGYMTETSAQELLLVSSPLNLSSYLDEEVYVGFSASTSNYTELNCVIKWEFNGEDIIHDNKSLLWVWIIVATVVVIMVGGVVFFLVWRRKHGVRTLGDAYPRIEDQIQHSSMAPKKFRLKEIKKATGGFSLQNKLGEGGFGTVYKGLLENKEIAVKSHSKDSRQGKQEFVAEVTTIGSLHHRNLVKLIGWCYESRELLLIYEYMPNGSLDKYLFDEQNFATNNSTLKWETRRSVIYGVAQALEYLHNGCEKRVLHRDIKASNIMLDSEFNAKLGDFGLARTIQKKNETHHSTKEIAGTPGYMAPETFLIGRATVETDVYAFGVLVLEVVCGRRPGNVNGQDDYKNNIAYWVWELHGKGRIVSALDKRISNEEMNEEEVSSVLVLGLACCHPNPHHRPSMRTVLQILNGEASPPVVPQERPAFVWPVMPPFFNEGVDISLLNGQTPMFTEITCR 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1850g00002 659 ProSitePatterns Protein kinases ATP-binding region signature. 341 362 IPR017441 GO:0005524
Stsc1850g00002 659 Gene3D Transferase(Phosphotransferase) domain 1 410 618 - -
Stsc1850g00002 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Stsc1850g00002 659 Gene3D - 26 268 - -
Stsc1850g00002 659 PANTHER - 54 622 - -
Stsc1850g00002 659 FunFam Probable L-type lectin-domain containing receptor kinase S.5 320 409 - -
Stsc1850g00002 659 FunFam Probable L-type lectin-domain containing receptor kinase S.5 26 266 - -
Stsc1850g00002 659 CDD STKc_IRAK 341 614 - -
Stsc1850g00002 659 CDD lectin_legume_LecRK_Arcelin_ConA 27 258 IPR001220 GO:0030246
Stsc1850g00002 659 SUPERFAMILY Protein kinase-like (PK-like) 316 612 IPR011009 -
Stsc1850g00002 659 ProSiteProfiles Protein kinase domain profile. 335 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1850g00002 659 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 261 IPR013320 -
Stsc1850g00002 659 FunFam probable L-type lectin-domain containing receptor kinase S.5 410 618 - -
Stsc1850g00002 659 Pfam Legume lectin domain 28 262 IPR001220 GO:0030246
Stsc1850g00002 659 Gene3D Phosphorylase Kinase; domain 1 320 409 - -
Stsc1850g00002 659 Pfam Protein kinase domain 336 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1850g00002 659 SMART serkin_6 335 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1850g00002 Stsc-Chr1850 2167 4146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1850g00002 70 628 Receptor kinase-like Gene Family AT5G55830 37.914 6.53e-124 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc1850g00002 Pkinase 1.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1850g00002 - - gmx:100785031 941.028