Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc184g00014 ATGGATGCCTTCCAAGATAAGGAAAAGTTCATACAGGCAAAGTATGTACAGAAATCACTCATCATCAGAGAAGAGGATATCCCCGGGAATCCTTCAGTTTCTATAAGAATCTGGCTAGCAGTTCAAGCTATGGATGTACGAGAAGTATATCGCCTTATTGTCACCTCAAACTCAAATGTGGTAAATACAAAATATGATGATATGGTTTCCCATGCTGATGCTAAAGCCTTGGACTTCGAATGTATTACACTGGAAGGCCATGAGCAGGATCCTGAATCTTGCCTCACCATTAAACAGACTAATGAGACAGAGAAGTGCTTCCATGGATGGTCATTATTACACCTGGCATGTAATACTGAATCTGCACTAATGGTTGAGTTGTTACTTCAATTTGGTGTTGATGTAAACATGCATGACTATCATGGTAGAACCCCCTTGCACCATTGCATCGCTGGTGGAAAAAATTCCCTGGCGAAGTTTCTGTTGAGAAGGGGTGCTAGACCGTCGGCTAAAGATGCCGGTGGACTCACTGTACTTGAAAGAGCAATGGAAATGGGGGCAATAACCGACGAAGAGCTATTCATTATGCTTGCCGAACACCAGTAA 606 0.4274 MDAFQDKEKFIQAKYVQKSLIIREEDIPGNPSVSIRIWLAVQAMDVREVYRLIVTSNSNVVNTKYDDMVSHADAKALDFECITLEGHEQDPESCLTIKQTNETEKCFHGWSLLHLACNTESALMVELLLQFGVDVNMHDYHGRTPLHHCIAGGKNSLAKFLLRRGARPSAKDAGGLTVLERAMEMGAITDEELFIMLAEHQ 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc184g00014 201 Pfam Ankyrin repeats (3 copies) 104 172 IPR002110 GO:0005515
Stsc184g00014 201 Gene3D - 56 201 IPR036770 -
Stsc184g00014 201 ProSiteProfiles Ankyrin repeat region circular profile. 108 139 - -
Stsc184g00014 201 ProSiteProfiles Ankyrin repeat profile. 141 173 IPR002110 GO:0005515
Stsc184g00014 201 SMART ANK_2a 141 170 IPR002110 GO:0005515
Stsc184g00014 201 SMART ANK_2a 108 137 IPR002110 GO:0005515
Stsc184g00014 201 ProSiteProfiles Ankyrin repeat region circular profile. 141 172 - -
Stsc184g00014 201 ProSiteProfiles Ankyrin repeat profile. 108 140 IPR002110 GO:0005515
Stsc184g00014 201 SUPERFAMILY Ankyrin repeat 99 188 IPR036770 -
Stsc184g00014 201 PANTHER CENTAURIN/ARF 2 199 IPR045258 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc184g00014 Stsc-Chr184 74658 76760 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc184g00014 101 179 Ion Channels AT4G32500 37.975 9.26e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc184g00014 K12489 - gmx:100796006 302.367