LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc184g00003	ATGTTTGGTTTGGTAACTGATCCTTATACGGGCCTTGCTCCTAAAAGAGGTGGAAAGGCGCCAGTTCCAGCTTCGAAGAAGAAGCCTGAGAAGGTTACGAACCCTTTGTTCGAGAAGCGTCCCAAGCAGTTTGGGATCGGAGGAGCATTGCCGCCAAAGAGGGATTTAACTCGTTTCGTGAAGTGGCCTAAGACCGTACAAATCCAGAGGAAGAAGAGGATCCTCAAGCAGAGGTTGAAGGTTCCACCTGCTTTGAACCAGTTCACTAAGACCCTTGACAAGAACCTTGCAACCAGCCTTTTCAAGATACTTCTGAAGTACAGGCCAGAGGATAAAGCTGAAAAGAAGGAGAGGCTTTTGAAAAGGGCCCAGGCCGAGACGGAGGGCAAAACCGTTGAAGCTAAGAAGCCCATTGTTGTGAAGTATGGTCTCAATCATGTTACCTACCTTATTGAGCAGAACAAAGCTCAGTTGGTTGTGATTGCTCATGATGTGGACCCAATTGAATTGGTTGTCTGGCTTCCAGCATTGTGTAGGAAGATGGAAATTCCATACTGCATTGTCAAGGGCAAGGCTCGCCTTGGTTCAATTGTCCACAAGAAGACCGCATCTGTTTTGTGCTTGACCAGTGTCAAGAACGAAGACAAATTAGAGTTCAGCAGGGTCCTAGAGGCTATTAAGGCTAACTTCAATGACAAGTTCGACGAGTACAGAAAGAAATGGGGTGGCGGTATCATGGGTTCCAAATCCCAAGCCAAAACTAAGGCAAAGGAGAGGCTTCTTGCTAAGGAGGCTGCTCAGAGGATGTCTTAG	813	0.4723	MFGLVTDPYTGLAPKRGGKAPVPASKKKPEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAEKKERLLKRAQAETEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTSVKNEDKLEFSRVLEAIKANFNDKFDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS	270

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc184g00003	270	PRINTS	Ribosomal protein L7A/RS6 family signature	159	172	IPR018492	-
	Stsc184g00003	270	PRINTS	Ribosomal protein L7A/RS6 family signature	140	154	IPR018492	-
	Stsc184g00003	270	PRINTS	Ribosomal protein L7A/RS6 family signature	185	199	IPR018492	-
	Stsc184g00003	270	PRINTS	Ribosomal protein L7A/RS6 family signature	175	185	IPR018492	-
	Stsc184g00003	270	PRINTS	Ribosomal protein L7A family signature	58	75	IPR001921	-
	Stsc184g00003	270	PRINTS	Ribosomal protein L7A family signature	197	221	IPR001921	-
	Stsc184g00003	270	PRINTS	Ribosomal protein L7A family signature	78	97	IPR001921	-
	Stsc184g00003	270	PRINTS	Ribosomal protein L7A family signature	102	115	IPR001921	-
	Stsc184g00003	270	PRINTS	Ribosomal protein L7A family signature	136	156	IPR001921	-
	Stsc184g00003	270	PRINTS	Ribosomal protein L7A family signature	229	249	IPR001921	-
	Stsc184g00003	270	PRINTS	Ribosomal protein L7A family signature	41	58	IPR001921	-
	Stsc184g00003	270	Gene3D	-	62	245	IPR029064	-
	Stsc184g00003	270	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	127	217	IPR004038	-
	Stsc184g00003	270	SUPERFAMILY	L30e-like	100	241	IPR029064	-
	Stsc184g00003	270	ProSitePatterns	Ribosomal protein L7Ae signature.	178	195	IPR004037	GO:0042254\|GO:1990904
	Stsc184g00003	270	MobiDBLite	consensus disorder prediction	1	35	-	-
	Stsc184g00003	270	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	54	253	-	-
	Stsc184g00003	270	FunFam	60S ribosomal protein L7a	62	245	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc184g00003	Stsc-Chr184	13398	15413	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc184g00003	12	270	Cytoplasmic Ribosomal Protein Gene Family	AT3G62870	84.942	4.39e-167	461

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc184g00003	K02936		-	gmx:100792324	479.944