Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1848g00001 ATGGTGGATTCAAAAGCCTACAGCATGAAGCTAACAAACCGAGAGGGTCATGGATTTCTGATAAGGGAGTTTCCGATTCCGGTACCGGTACCGGTACGGGTATGTTCAATGAATGAAGCTAAATTTGTGAAGAATTATGATATGCCAGAGCTTGTTGTTTTTGTGTGTGAGGATCATGACCAGTTTGTGAAGGATATTTGCATTAAGAAAGGTGATTCAACAAAAGGCAACAAAGGTGATATGAGAATTGTTATGGAGAGAGATTCATGCAATTCAAGTGGATCAGAATTTGTAGCTTCATCCATTGTTAAGGATGTGAATGTGATCAAAACTTATGATTTCAGGGATGGGAATTCAATTGAGCACCACACAAAGAAGAAGACATCAAAGGCACTAGGAGAGGTGAGTCTCTTATCTCCTTCAATTCTTAAATCTGAAGGTGTGCCCATATATCACACTGTCCAGCATTCCGGAGAATTTGTTGTTACTTTTCCAAGGGCATACCACTCTGGCATCAACTGTGGTTTCAACTGTGCAAAGGCTGTGAATGTGGCTCCTGTCGATTGGTTTTTGCATGGCCAAAATGCTGTTGAGCTTTACAGTATGCAGCGTCCTAAGACATCATTATCACACGACAAGTTGTTATTTGGATCAGCTCAGGAAGCTGTAAGAACTCTTTCAGATCTAACCCTTCATGGAAAAGAAAATCTCAAATATTTTAAATGGAAAGGTTTCTATGGGAAAAATGGAGTAGCACAAGAGTAG 765 0.4013 MVDSKAYSMKLTNREGHGFLIREFPIPVPVPVRVCSMNEAKFVKNYDMPELVVFVCEDHDQFVKDICIKKGDSTKGNKGDMRIVMERDSCNSSGSEFVASSIVKDVNVIKTYDFRDGNSIEHHTKKKTSKALGEVSLLSPSILKSEGVPIYHTVQHSGEFVVTFPRAYHSGINCGFNCAKAVNVAPVDWFLHGQNAVELYSMQRPKTSLSHDKLLFGSAQEAVRTLSDLTLHGKENLKYFKWKGFYGKNGVAQE 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1848g00001 254 SUPERFAMILY Clavaminate synthase-like 142 222 - -
Stsc1848g00001 254 Gene3D Cupin 107 229 - -
Stsc1848g00001 254 Pfam JmjC domain, hydroxylase 125 184 IPR003347 -
Stsc1848g00001 254 ProSiteProfiles JmjC domain profile. 44 201 IPR003347 -
Stsc1848g00001 254 PANTHER LYSINE-SPECIFIC DEMETHYLASE 135 225 - -
Stsc1848g00001 254 SMART cupin_9 3 201 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1848g00001 Stsc-Chr1848 614 2484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1848g00001 135 251 JUMONJI Transcription Factor Family AT2G34880 65.812 1.24e-48 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc1848g00001 JmjC 4.1e-17 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1848g00001 K11446 - gmx:100814590 195.282