Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc184790g00003 ATGAAATTGTGGTTCTGGGCTGGAAGGAATGATGCTGGCGTTGATAGCCCTACAGATGGAGAGAAAAAGAAAATGAGGCGTCAATCTCAGTCCAAAACTATCAAGGTGGTGATCAGTTATGCAGCAAATATCCCAATTCAAGCAATCACAGATGCATTGCACGGACAGTATTCAGAGCATTTCCAGGAAGCATTGAGGGTCCTTGACATCATACTGAGGCAGCATGCAGCAAAGCAGGGCTGTCTCCTCATTCGCCAATCCTTCTACCATGGCAATCCAAATGATTATAAGGACATAGGAGGTGGTGTTCAAAGCTGCCGAGGTTTCCATTCAAGTTTCCGTCCCACTGAAGGAAGTTTATCTCTGAATATTGG 374 0.4519 MKLWFWAGRNDAGVDSPTDGEKKKMRRQSQSKTIKVVISYAANIPIQAITDALHGQYSEHFQEALRVLDIILRQHAAKQGCLLIRQSFYHGNPNDYKDIGGGVQSCRGFHSSFRPTEGSLSLNIG 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc184790g00003 125 SUPERFAMILY PAZ domain 62 124 IPR036085 GO:0005515
Stsc184790g00003 125 SMART DUF1785_2 82 125 IPR014811 -
Stsc184790g00003 125 Pfam Argonaute linker 1 domain 84 124 IPR014811 -
Stsc184790g00003 125 Pfam N-terminal domain of argonaute 17 72 IPR032474 -
Stsc184790g00003 125 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 19 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc184790g00003 Stsc-Chr184790 2755 3213 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc184790g00003 28 124 Eukaryotic Initiation Factors Gene Family AT1G48410 37.755 3.65e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc184790g00003 K11593 - cit:102615576 162.155