Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1846g00001 ATGGGGAATCCAAGAGGAAGAGGAAGAGGAAAAGGAGGAGGAGCTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTTTTCTTGTTTTTTAGCACTGCAAGTGCTTTGCTTTCTCCCAAAGGAGTGAACTTTGAAGTTCAAGCTTTAATGGGGATCAAGAACTCACTGGTGGATCCTCATGGTGTTTTGGATAATTGGGATGCTGATGCTGTTGATCCTTGTAGCTGGACTATGGTTACTTGCTCTGCTGAGAACTTGGTGATTGGATTGGGTACTCCAAGTCAAAGTTTATCTGGTACTCTCTCTCCAAGCATAGGAAACTTAACCAACCTTCAGATTGTCCTGCTTCAGAATAACAACATAACTGGACCAATCCCTTCAGAGTTAGGAAAACTTCCTAAGCTTCAAACTCTTGATCTCTCTAATAACTTCTTCAGTGGTGAAATTCCACCCTCACTTGGTCACTTGAGAAGTTTGCAATACATGAGGCTCAATAATAACAGTCTTCATGGTGAATTGCCAGAATCATTGGCCAATATGACTCAGCTTGCTTTTCTTGACTTGTCCTACAACAATATCAGTGGACCTATACCAAGAATTTTGGCTAAATCCTTCAACATTGTTGGAAATCCCCTTGTTTGTGCAACTGGTAAAGAACCAAACTGCCATGGCATGACGCTGATGCCAATGTCCATGAACTTAAATGGCACTGAAGATGCATTACCAGCAAGCAAACCGAAATCTCATAAAATGGCAATTGCCTTCGGCTTGAGTCTTGGATGTCTCTGCCTCATAGTTCTCGGTTTCGGCCTTGTTCTTTGGTGGAGGCACAAGCACAATCAACAAGCATTCTTTGATGTTAAAGACCGGCATCATGAAGAAGTGTACCTTGGAAACTTGAAGAGGTTCCAATTCAGAGAACTCCAAGTTGCTACCAACAACTTTAGCAGCAAGAACATACTTGGAAAGGGTGGTTTTGGAAATGTCTACAAAGGAGTTCTCTCTGATAGCACTCTTGTAGCTGTCAAGAGGCTGAAAGATGGAAATGCCANNNNNNNNNNGTTTCAGACTGAAGTCGAAATGATCAGCCTCGCCGTCCACCGCAACCTCCTCAGACTCTATGGATTCTGCATGACCCCTACAGAAAGGCTCTTAGTTTACCCTTACATGTCCAATGGCAGTGTCGCTTCGCGTCTTAAGGGTAAGCCGGTGTTGGATTGGGGAACAAGGAAGAACATTGCATTAGGAGCAGCAAGGGGATTGTTATATCTTCATGAGCAATGTGATCCAAAGATAATACATAGAGATGTGAAGGCTGCGAACATATTGCTTGATGACTATTGTGAAGCAGTGGTTGGTGATTTCGGGTTGGCAAAGCTTTTGGATCATCAAGATTCACATGTCACAACTGCAGTTAGGGGCACCGTAGGGCATATAGCCCCAGAGTATCTATCAACAGGACAATCATCCGAGAAAACTGATGTGTTTGGATTCGGGATTCTCCTCTTGGAATTGATCACAGGACAAAGGGCACTAGAATTTGGAAAAGCTGCTAACCAAAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCATCAGGAGAAGAAGCTCGAGTTGCTTGTAGACAAGGATCTTAAAGGGAACTATGACAGGATTGAGCTTGAGGAAATGGTTCAAGTGGCATTGTTATGTACTCAAAACCTTCCGGGGCATAGACCAAAGATGTCTGAAGTTGTAAGAATGCTTGAAGGTGATGGATTAGCAGAGAGATGGGAAGCTTCTCAAAGAGCTGATACTAGTGGTGCTAATGGTACTGCTACCACCACAAAATGCAAACCTCATGAATCATCTTTATCAGATAGGTATTCTGATCTCACTGATGATTCTTTGTTGTTAGTCCAAGCCATGGAGCTATCAGGACCAAGGTGA 1932 0.4281 MGNPRGRGRGKGGGAVLLLLLLLLLPFFLFFSTASALLSPKGVNFEVQALMGIKNSLVDPHGVLDNWDADAVDPCSWTMVTCSAENLVIGLGTPSQSLSGTLSPSIGNLTNLQIVLLQNNNITGPIPSELGKLPKLQTLDLSNNFFSGEIPPSLGHLRSLQYMRLNNNSLHGELPESLANMTQLAFLDLSYNNISGPIPRILAKSFNIVGNPLVCATGKEPNCHGMTLMPMSMNLNGTEDALPASKPKSHKMAIAFGLSLGCLCLIVLGFGLVLWWRHKHNQQAFFDVKDRHHEEVYLGNLKRFQFRELQVATNNFSSKNILGKGGFGNVYKGVLSDSTLVAVKRLKDGNAXXXXFQTEVEMISLAVHRNLLRLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKNIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLELLVDKDLKGNYDRIELEEMVQVALLCTQNLPGHRPKMSEVVRMLEGDGLAERWEASQRADTSGANGTATTTKCKPHESSLSDRYSDLTDDSLLLVQAMELSGPR 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1846g00001 643 ProSiteProfiles Protein kinase domain profile. 316 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1846g00001 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Stsc1846g00001 643 MobiDBLite consensus disorder prediction 597 614 - -
Stsc1846g00001 643 FunFam Somatic embryogenesis receptor-like kinase 1 391 603 - -
Stsc1846g00001 643 SUPERFAMILY L domain-like 46 208 - -
Stsc1846g00001 643 SMART serkin_6 316 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1846g00001 643 SUPERFAMILY Protein kinase-like (PK-like) 293 584 IPR011009 -
Stsc1846g00001 643 Gene3D Transferase(Phosphotransferase) domain 1 391 603 - -
Stsc1846g00001 643 Pfam Leucine Rich repeats (2 copies) 110 150 IPR025875 -
Stsc1846g00001 643 MobiDBLite consensus disorder prediction 592 621 - -
Stsc1846g00001 643 Pfam Leucine rich repeat N-terminal domain 46 83 IPR013210 -
Stsc1846g00001 643 Gene3D Ribonuclease Inhibitor 43 225 IPR032675 -
Stsc1846g00001 643 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 21 594 - -
Stsc1846g00001 643 FunFam Somatic embryogenesis receptor kinase 1 285 390 - -
Stsc1846g00001 643 Pfam Protein kinase domain 317 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1846g00001 643 FunFam Putative LRR receptor-like serine/threonine-protein kinase 43 225 - -
Stsc1846g00001 643 Gene3D Phosphorylase Kinase; domain 1 285 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1846g00001 Stsc-Chr1846 3996 7583 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1846g00001 15 643 Receptor kinase-like Gene Family AT5G16000 75.932 0.0 991
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc1846g00001 Pkinase 2.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1846g00001 - - gmx:100798412 1105.12