Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc184494g00001 ATGGTGGTTGCTCCCAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTATACTACGTGCAGTAAAGTTCCTTGGAAACCCTGAAGAGAGGAGACATATAAGGGAGGAATTACTGGTCGCGGGGAATTTTGATGTTTGCGTTACAAGTTTTGAAATGGCAATCAAGGAGAAGTCTACATTGCGTCGATTTAGTTGGCGCTACATCATTATTGATGAAGCTCATCGAATTAAGAATGAAAATTCCCTGCTGTCCAAAACAATGAGACTCTATAACACAAATTATCGCCTCCTTATTACCGGCACACCACTTCAG 327 0.4159 MVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPEERRHIREELLVAGNFDVCVTSFEMAIKEKSTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQ 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc184494g00001 109 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 109 IPR014001 -
Stsc184494g00001 109 PANTHER SNF2/RAD54 HELICASE FAMILY 1 109 - -
Stsc184494g00001 109 Pfam SNF2-related domain 1 109 IPR000330 GO:0005524|GO:0140658
Stsc184494g00001 109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 109 IPR027417 -
Stsc184494g00001 109 Gene3D - 1 109 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc184494g00001 Stsc-Chr184494 340 798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc184494g00001 1 109 RAD5 or RAD16-like Gene Family AT1G02670 28.926 8.53e-11 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc184494g00001 SNF2_N 9.9e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc184494g00001 K11654 - qsa:O6P43_021705 218.009