Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc184427g00001 ATGGCTTTGAGTTCTGAATCCAACAAGTGGAAGTATGATGTGTTCCTGAGCTTCAGAGGGGTTGACACACGTAGGAATTTCACAAGCCATCTCTACCATGCTCTATTTCAAAAGGGAGTCAATACCTCCATAGACTACAAGGAGCTTGAAAAGGGAGGGCAGATTTCACCTTCAATTCTTAGAGCTATTGAAGGATCTAGAATATCAGTTATCATATTCTCTGAAAACTATGCATCTTCCACTTCTTGCTTGGATGAACTCACTATGATCCTTGAGTGCAAGGATTCCAAGGGGCAGCTGGTTTTGCCAGTCTTTTATAATGTGAATCCATTTCAACTAAGAGGACAGCATGAAAATTTTGCAGAATATTTAGCAAAACATGAAGAGAAGTTCAGGGATGATGATATCAACAAAGTGAAAAGGTGGAGAGCAGCTCTATATCAAGTTTCTACTTTTTATGGGTGGCATCTGGGAGAAGGGCAGGAATCAAAGTTTGTGCAGAGAATTGTTGAAGAGATAATGAATAAGCTGAATCTCATACCTTTCAATGTTGCTAAGCATCCTGTTGGGTTGGATTCACCGACTGAAGATATCAAATCACTCTTAGACAGTGGATCAGACGGCGTGCGGGCTGTAGGAATTTATGGCATTGGTGGAATAGGAAAAACAACACTTGTTAAGGCTGTTTACAATCATATTTCTCATCAGTTTGAGGGTAGTGCCTTCCTTGCAAATGTCAGAGAAATTTCAAGTCAAACGCATGGCTTAGTTCAACTACAAGAAGCTCTTCTCTCGGAGATTTTGAGCCGTAGAGATTTCAAAGTAGGCAACAAAGATAGAGGGATTAATCTGATAAAGAGCAGGCTTTGTTGCAAAAAGGTTCTCGTAGTTGTTGATGATTCTGACTCATTGGAGCAACTGGAATCATTGGTTGGAGACTGCAGTTGGTTTGGATCAGGCAGTAGGATTATCATAACAACTAGAGATGAGCATTTGCTAATTGCTCACAAT 1011 0.4036 MALSSESNKWKYDVFLSFRGVDTRRNFTSHLYHALFQKGVNTSIDYKELEKGGQISPSILRAIEGSRISVIIFSENYASSTSCLDELTMILECKDSKGQLVLPVFYNVNPFQLRGQHENFAEYLAKHEEKFRDDDINKVKRWRAALYQVSTFYGWHLGEGQESKFVQRIVEEIMNKLNLIPFNVAKHPVGLDSPTEDIKSLLDSGSDGVRAVGIYGIGGIGKTTLVKAVYNHISHQFEGSAFLANVREISSQTHGLVQLQEALLSEILSRRDFKVGNKDRGINLIKSRLCCKKVLVVVDDSDSLEQLESLVGDCSWFGSGSRIIITTRDEHLLIAHN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc184427g00001 337 Pfam NB-ARC domain 197 331 IPR002182 GO:0043531
Stsc184427g00001 337 Gene3D - 8 174 IPR035897 -
Stsc184427g00001 337 ProSiteProfiles TIR domain profile. 10 177 IPR000157 GO:0007165
Stsc184427g00001 337 Gene3D - 175 337 IPR027417 -
Stsc184427g00001 337 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 179 - -
Stsc184427g00001 337 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 155 IPR035897 -
Stsc184427g00001 337 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 333 IPR044974 GO:0006952
Stsc184427g00001 337 PRINTS Disease resistance protein signature 288 302 - -
Stsc184427g00001 337 PRINTS Disease resistance protein signature 211 226 - -
Stsc184427g00001 337 SMART till_3 11 152 IPR000157 GO:0007165
Stsc184427g00001 337 Pfam TIR domain 11 180 IPR000157 GO:0007165
Stsc184427g00001 337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 334 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc184427g00001 Stsc-Chr184427 17 1783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc184427g00001 7 334 WRKY Transcription Factor Family AT4G12020 27.679 2.39e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc184427g00001 - - ahf:112749316 570.081