Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc184209g00001 TTTGAGAAGAAACCCATGATTTCATTTTCATTTGGGTTTTGTGTTAATTTGCAGTATCTATTTGTGACATTAAGGGATATTACTGTATTGCCTTGTGGGCATACCATACATTTGGGATGTGTCAAAGAGATGGAAAAACATCATAGGTACTCTTGTCCGGTTTGTTCCAAATCAATATGTGACATGTCAAGTTTATGGAAGAAGCTTGATCAAGTGATTGCCTCAACTCCAATGCCAGAAAGCTACAGAAACAAGATGGTGTGGGTTCTATGTAATGTTTGTGGAGTGAACTCTCAAGTGCAATTCCATGTTGTGGCGCATAAGTGCTTAAGTTGCAACTCATACAACACAAGGCAGATACAGGGAACCCTAATAATACCTCATGTTCTTCAAGAGTCACTGAGATGGTGA 411 0.3893 FEKKPMISFSFGFCVNLQYLFVTLRDITVLPCGHTIHLGCVKEMEKHHRYSCPVCSKSICDMSSLWKKLDQVIASTPMPESYRNKMVWVLCNVCGVNSQVQFHVVAHKCLSCNSYNTRQIQGTLIIPHVLQESLRW 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc184209g00001 136 Gene3D - 84 126 - -
Stsc184209g00001 136 SUPERFAMILY RING/U-box 24 59 - -
Stsc184209g00001 136 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 15 121 - -
Stsc184209g00001 136 ProSiteProfiles Zinc finger RING-type profile. 14 56 IPR001841 -
Stsc184209g00001 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 66 IPR013083 -
Stsc184209g00001 136 Pfam Zinc-ribbon 60 118 IPR039512 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc184209g00001 Stsc-Chr184209 4446 5432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc184209g00001 18 127 C2H2 Transcription Factor Family AT3G18290 40.000 9.96e-25 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc184209g00001 K10144 - gmx:100812709 201.06