Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc184171g00001 GGGACAAAACATAATAACGATGATAAAATTATAGAAGACTTTGAGGTGCCATTGCTTGACTTTGCTTTAATAGTGCAAGCAACAAATGATTTCTCAAGTAATAACAAGCTTGGTGAGGGTGGTTTTGGTCCTGTGTACAAGGGAATACTACCAGATAAACAAGAGATCGCTGTTAAGAGACTTTCACGGACATCAAACCAAGGATTAAATGAGTTTATGAATGAGGTTAAATTATGCACCAAACTTCAACACCGAAATCTTGTTAAAGTGCTGGGTTGCTCTATCCGTCAAGATGAGAAATTACTCGTATATGAATACATGCCTAATAGAAGCTTAGATTTCTTTCTTTTCGATCCTACTCAAGCCAAACAATTAGATTGGTCTAAACGATTCTTCATTATAAATGGAATTGCTCGAGGATTACTTTATCTTCACCAAGACTCAAGACTAAGAATCATACATCGAGATCTTAAAGCAAGCAATGTTCTGTTGGACAATGAAATGAATCCAAAAATTTCAGATTTTGGCTTGGCTCGATTGTGTGGAAGCAATCAAAATGAAGGAAATACAAGCAAAGTTGTCG 583 0.3602 GTKHNNDDKIIEDFEVPLLDFALIVQATNDFSSNNKLGEGGFGPVYKGILPDKQEIAVKRLSRTSNQGLNEFMNEVKLCTKLQHRNLVKVLGCSIRQDEKLLVYEYMPNRSLDFFLFDPTQAKQLDWSKRFFIINGIARGLLYLHQDSRLRIIHRDLKASNVLLDNEMNPKISDFGLARLCGSNQNEGNTSKVV 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc184171g00001 194 Gene3D Phosphorylase Kinase; domain 1 2 106 - -
Stsc184171g00001 194 Gene3D Transferase(Phosphotransferase) domain 1 107 194 - -
Stsc184171g00001 194 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 106 - -
Stsc184171g00001 194 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 194 - -
Stsc184171g00001 194 SMART serkin_6 31 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc184171g00001 194 SUPERFAMILY Protein kinase-like (PK-like) 13 186 IPR011009 -
Stsc184171g00001 194 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 107 194 - -
Stsc184171g00001 194 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Stsc184171g00001 194 ProSiteProfiles Protein kinase domain profile. 31 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc184171g00001 194 Pfam Protein tyrosine and serine/threonine kinase 34 187 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc184171g00001 Stsc-Chr184171 3992 5539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc184171g00001 5 194 Receptor kinase-like Gene Family AT4G23230 61.053 4.77e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc184171g00001 PK_Tyr_Ser-Thr 4.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc184171g00001 - - gsj:114378841 300.056