Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183g00006 ATGGCATTCACACTAGAGAGTAGTAGTACTAGTGAAGAGGAGAACATGAATAACATGATGATGATGATGGATTCATCACAAAAGAAGTTATCATCATCATCATCATCAGTGCCTGCACCATTCTTGACAAAGACATACCAACTAGTAGATGATCCTATGACTGACCACATAGTATCATGGGGGCATGATGGTCATTCCACATCATTTGTTGTTTGGAGGCCACCTGAGTTTGCAAGAGACCTTCTTCCAAACTATTTCAAACACAACAACTTCTCCAGCTTTGTTAGGCAGCTCAATACCTATGGATTCAAGAAGGTAGTTGCTGATAGGTGGGAATTTGCAAATGAGTATTTCAGAAAAGGAGCAAAGCATCTTCTATGTGAAATTCATAGAAGAAAAACCCCTCATCATCATCATCAAGAGAACATTATTAATAACAATGAATCTTTATGTTGGATTGATTCTAATACTAATACTACTACTATTCCTACTTCTTCATTATTACTACCTTCTCCTAAATCATCATCATTATTAGGAACTAGTAGTGATCATCATCATCATCATCATCATATGTTAGCAGCACTTTCTGAAGACAATCAAAGGCTAAGGAGAAAGAATTTGATGCTCTTATCAGAACTCACTCACATGAAGAATCTCTACAATGATATCATTTACTTCATTCAAAACCATCTCAAACCTGCTGCTTCTTCTCCCTTTCATCAAACAATTCCAAAGCTTGTGGAGTTGGATAATAATAATAATTCATCATCACCAAAGGGTATGAGTATTAGTGATGATGATGATGATAATGATGATGATTATATCAATAATTGTGGTTCTTCTGTGAAGCTCTTTGGTGTTCCTCTTAGTGGTAAAAAGAGATTACACCCAGATAATATTTTTCAACAACATTAA 915 0.353 MAFTLESSSTSEEENMNNMMMMMDSSQKKLSSSSSSVPAPFLTKTYQLVDDPMTDHIVSWGHDGHSTSFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFRKGAKHLLCEIHRRKTPHHHHQENIINNNESLCWIDSNTNTTTIPTSSLLLPSPKSSSLLGTSSDHHHHHHHMLAALSEDNQRLRRKNLMLLSELTHMKNLYNDIIYFIQNHLKPAASSPFHQTIPKLVELDNNNNSSSPKGMSISDDDDDNDDDYINNCGSSVKLFGVPLSGKKRLHPDNIFQQH 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183g00006 304 SMART hsfneu3 37 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc183g00006 304 MobiDBLite consensus disorder prediction 249 272 - -
Stsc183g00006 304 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 30 256 IPR027725 -
Stsc183g00006 304 Coils Coil 192 212 - -
Stsc183g00006 304 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc183g00006 304 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc183g00006 304 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc183g00006 304 PRINTS Heat shock factor (HSF) domain signature 41 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc183g00006 304 SUPERFAMILY "Winged helix" DNA-binding domain 38 132 IPR036390 -
Stsc183g00006 304 Gene3D - 33 134 IPR036388 -
Stsc183g00006 304 FunFam Heat stress transcription factor B-4 33 133 - -
Stsc183g00006 304 Pfam HSF-type DNA-binding 41 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183g00006 Stsc-Chr183 55522 56860 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183g00006 1 296 HSF AT1G46264 45.748 1.20e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc183g00006 HSF_DNA-bind 2.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183g00006 K09419 - gmx:100806150 313.538