Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183978g00001 ATGAAGAAGAAACAGGTGGCGGTGAAGACTTCGTCGACGGTGATAAGGAACGTAAGGTACGGGGAGTGCCAAAAGAATCACGCGGCTAATATGGGAGGGTACGCGGTGGATGGGTGCAGGGAATTCATGGCCAGTGCAGGGGAAGGAACCAGCGGCGCTCTCACATGCGCTGCTTGTGGCTGCCACCGCAACTTCCACCGTAGGGAGGTGCAAACTGAGGTTGTCTGTGAGTACTCTCCTCCTCATTATTAA 252 0.5476 MKKKQVAVKTSSTVIRNVRYGECQKNHAANMGGYAVDGCREFMASAGEGTSGALTCAACGCHRNFHRREVQTEVVCEYSPPHY 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183978g00001 83 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 73 - -
Stsc183978g00001 83 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 69 IPR006456 -
Stsc183978g00001 83 Pfam ZF-HD protein dimerisation region 17 70 IPR006456 -
Stsc183978g00001 83 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 19 70 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183978g00001 Stsc-Chr183978 2494 3550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183978g00001 1 82 Zinc finger-homeobox gene family AT1G18835 71.591 5.36e-39 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc183978g00001 ZF-HD_dimer 6.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183978g00001 - - mtr:11409341 165.236