Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183877g00001 AAGTTTTTGAAGTTGGACAAGCTGGATCATGATGTTAGCCTTCCTGATCCGCCTGGAGTTTCTACAGATGGAACTGGACAAGTGGGAACTTATTTCTATACCGCTCCTGAAATTGAGCAAGGATGGCCTAAGATTGATGAGAAGGCGGATATGTACAGTTTAGGTGTTGTTTTCTTTGAGCTTTGGCACCCATTTGGGACACAAATGGAGAGACATTTTGTGTTATCTGATCTGAAACTGAAGGGAGAACTTCCTCCAGCATGGGTTGCTCAGTTTCCAGAACAGGAATCCTTGGTACGAAGGTTGATGTCTCCGAGTCCTTCTGATCGTCCTTCTGCCACAGAACTTCTACATAATGCCTTTCCTCCGCGAATGGAATCTGAAGTATTGGATGGTATGCTCCGAACAATGAAGAAATCAGAGGATAGAAGCATATACGACAAATTTGTAAATGCAGTCTTTGAAGAAGACATGTTAAGCTCAAAACATATTCATCAAGCTGGAAGCTTGGGGACAATTGGAGATAACTTTTCATCTACTCAGTATACAGATTTTGAAGCTGAGGTTCGAGATTATGTTACAGATGTGAGCAGGGAAATTTTCAGACAGCATTGTGGGAAGCATCGAGAAATACTACCAATGCGATTATTGGATGATTACCCACAGTTTAACAGGAGTAGAAATGCGGTTAAACATCTGACCCGTGGAGGAGACATGGTTGAACTTTGCCATGAGCTGCGCCTGCCTTTTGTGAACTGGATTATATCAAATCAGAAATCTTCATTCAAAAGATATGAGATTTCGAGTGTGTATAGAAGAGCAGTTGGGCACTCGCCACCAAATCGCTACCTTCAGGGAGATTTTGACATTATTGGTGGTACATCAGCGTTGACAGAGGCAGAGGTCATAAAGGTGACAAGGGACATAGTCACTTGCTTTTTCCGTGAAGATTCATGTGACATTCACCTAAACCATGGTGGACTACTGGAGGCGATTTGGTCGTGGACTGGAATCAAAGCAGAACACTGGATTAAAGTTGCAGAGATTCTTTTGATGATGGGTTCATTGCGTCCACAATCTTCAAAAAGGAAATCAAAATGGGTATTGATAAGGCGGCAGCTTTTGCAGGAACTAAAACTAGAAGAAGCAACTGTAAACAAACTGCATAGTGTTAGTTCAAGGTTTTGTGGATCTGCATATCAGGTACTTCATAGATTAAGAGGAGCTCTTCCATCAGATAAACGCACATGCAAGGCACTTGATGAATTGTCCGAACTCTTAAAACACTTGAGGATTTGGAGGATAGACGAAAACGTTTACATTGATCCATTGATGCCACCAGCTGAAAGATATCATAGAGATTTATTTTTTCAGGTGTACTTAAGGAAGGAGAACAATCCTGGGTCACTCTCTGATGGTGCCGTGCTAGCTGTTGGTGGTCGTTATGACTATCTGCTTCATCAGTTGTCCAGTTACAACTATAAAGGAAATCCCCCCAGTGGTGTAGGGAGTAGCCTTGCGTTAGAGAGAATAATTCAGAATTGTCATATGAATTCACTTAGAAATGAAGGCAGCACCAGTGTTCTTGTCTGTTCGAGAGGAGGAGGTGGTCTGATGATGGAGCGGATGGAACTAGTTGCTGAATTATGGGGAGAGAAACTTAAGGCTGAATTTGTTCCCATCCCTGATCCAAGTCTTACAGAGCAGTATGAGTATGCCAATGAGCATGATATCAAATGTCTTGTTATCATCGATTCAGGTCTCTCACAGACAGGTTCTGTTAAGGT 1787 0.4225 KFLKLDKLDHDVSLPDPPGVSTDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTQMERHFVLSDLKLKGELPPAWVAQFPEQESLVRRLMSPSPSDRPSATELLHNAFPPRMESEVLDGMLRTMKKSEDRSIYDKFVNAVFEEDMLSSKHIHQAGSLGTIGDNFSSTQYTDFEAEVRDYVTDVSREIFRQHCGKHREILPMRLLDDYPQFNRSRNAVKHLTRGGDMVELCHELRLPFVNWIISNQKSSFKRYEISSVYRRAVGHSPPNRYLQGDFDIIGGTSALTEAEVIKVTRDIVTCFFREDSCDIHLNHGGLLEAIWSWTGIKAEHWIKVAEILLMMGSLRPQSSKRKSKWVLIRRQLLQELKLEEATVNKLHSVSSRFCGSAYQVLHRLRGALPSDKRTCKALDELSELLKHLRIWRIDENVYIDPLMPPAERYHRDLFFQVYLRKENNPGSLSDGAVLAVGGRYDYLLHQLSSYNYKGNPPSGVGSSLALERIIQNCHMNSLRNEGSTSVLVCSRGGGGLMMERMELVAELWGEKLKAEFVPIPDPSLTEQYEYANEHDIKCLVIIDSGLSQTGSVKV 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183877g00001 596 PANTHER HISTIDYL-TRNA SYNTHETASE 180 596 - -
Stsc183877g00001 596 Pfam Protein kinase domain 26 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc183877g00001 596 Gene3D Bira Bifunctional Protein; Domain 2 179 522 IPR045864 -
Stsc183877g00001 596 Gene3D Transferase(Phosphotransferase) domain 1 5 129 - -
Stsc183877g00001 596 SUPERFAMILY Class II aaRS and biotin synthetases 182 514 IPR045864 -
Stsc183877g00001 596 SUPERFAMILY Protein kinase-like (PK-like) 24 123 IPR011009 -
Stsc183877g00001 596 Gene3D - 523 596 IPR036621 -
Stsc183877g00001 596 ProSiteProfiles Protein kinase domain profile. 1 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc183877g00001 596 FunFam eIF-2-alpha kinase GCN2 180 518 - -
Stsc183877g00001 596 Pfam Histidyl-tRNA synthetase 272 511 IPR041715 -
Stsc183877g00001 596 FunFam Histidine--tRNA ligase, cytoplasmic 523 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183877g00001 Stsc-Chr183877 480 6416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183877g00001 28 121 MAP Kinase Kinase Kinase Kinase AT3G15220 32.632 6.75e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Stsc183877g00001 tRNA-synt_His 1.9e-12 CL0040
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183877g00001 K16196 - gmx:100797996 916.376