Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183813g00001 CTCATAGGTTGGTGCCATGATCGAGGTGAGTTCCTTCTTGTTTATGAGTATATGCCCAATGGTAGTCTTGATTCCCATTTGTTTGGGAATAGGACTCCATTATCTTGGAACTTGAGGCACAAGATAGCTCTGGGTTTGGCTTCTGCTATTCTCTACCTTCATGAAGAATGGGAACAATGTGTACTGCATAGAGATATAAAACCAAGCAATGTGATGTTGGATTCTGGTTTCAATGTGAAGCTTGGCGATTTCGGTTTGGCTAAGCTCATAGATCATGAGTTAGGGTCTCAGACATCAGCTTTGGCTGGAACAATTGGGTACATGGCTCCAGAGTATATAAGCAGTCGTAGGGCAAGTAAGGAGTCAGATGTGTATAGCTTTGGGTTGGTTGCTTTAGAAATTGTAACTGGAAAGAAGGTGTTTGAGCTTATAGATGATCAAGAGAGTCCAAAGGGATTGGCTGAGTGGGTGTGGGATCATTATGGAAGAGAAGAGCTTCATATGGTTGTGGATGAGAGAGTAGTAAAAGATTTTGATGAGAAAGAAGCCAAGTGTTTGATGATTGTTGGGCTGTGGTGTTGTCATCCTGATAAGAATTTAAGACCATCAATAAGACAAGCAATTCAAGTGATTAAATTTGAAGGTCCATTGCCACAACTTCCAACAAAGATGCCTGTTGCAATATATCATATTCCTACACCTTCTGTCAGCTCATCAGATACTAATGCTTCAATTAGTGTTAGCCTCCAGTCAGGTCGTTGA 762 0.4121 LIGWCHDRGEFLLVYEYMPNGSLDSHLFGNRTPLSWNLRHKIALGLASAILYLHEEWEQCVLHRDIKPSNVMLDSGFNVKLGDFGLAKLIDHELGSQTSALAGTIGYMAPEYISSRRASKESDVYSFGLVALEIVTGKKVFELIDDQESPKGLAEWVWDHYGREELHMVVDERVVKDFDEKEAKCLMIVGLWCCHPDKNLRPSIRQAIQVIKFEGPLPQLPTKMPVAIYHIPTPSVSSSDTNASISVSLQSGR 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183813g00001 253 PANTHER - 1 212 - -
Stsc183813g00001 253 Gene3D Transferase(Phosphotransferase) domain 1 18 232 - -
Stsc183813g00001 253 ProSitePatterns Serine/Threonine protein kinases active-site signature. 61 73 IPR008271 GO:0004672|GO:0006468
Stsc183813g00001 253 ProSiteProfiles Protein kinase domain profile. 1 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc183813g00001 253 SUPERFAMILY Protein kinase-like (PK-like) 1 239 IPR011009 -
Stsc183813g00001 253 SMART serkin_6 1 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc183813g00001 253 Pfam Protein kinase domain 1 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc183813g00001 253 FunFam Lectin-domain containing receptor kinase A4.3 18 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183813g00001 Stsc-Chr183813 15 776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183813g00001 1 230 Receptor kinase-like Gene Family AT5G10530 67.672 2.19e-114 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc183813g00001 Pkinase 7.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183813g00001 - - adu:107487060 460.685