Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183746g00001 ATGGCTCAAGCAACGAACGGTGGGGATCTGAATCAGAATGGACAGCAGCAGAATCAGCAGCAGTGGGCGCAGCCGCATCAGTATCAGCAGCAATGGATGGCCATGCAGTATCCGGCAACCGCCATGGCTATGATGCAGCAGCAGATGATGATGTACCCGCAGCATTACGTGCCGTATATTCATCCTCACCATTACCAGCCTCCACCGCCGCCGCCGGCCGCGCACCACCACCACCACCAGCAGCAGCACCACTTCAAGCAGCAGCACACTCCGCCGCCGTCGTCTCAGCAGCACCACAACAACCACCATGGCCAGCAGAAGCAGCAATCTGGCTCCAACGGCGAAGAGATCAGGACGATCTGGCTCGGCGACCTTCACCATTGGATGGATGAGAACTACCTCGTCAATTGCTTTGCTCACACCGGCGAGGTTTTATCAGCCAAAGTCATACGGAATAAGCAAACAGGCTCATCGGAGGGATATGGATTTGTGGAGTTTTATTCACGAGCAACAGCTGAGAAGGTCTTGCAGAACTACAATGGTACAATGATGCCAAGTACGGATCAGGCATTCCGTCTGAATTGGGCTACATTCAGTACAGGCGATAGGCGATCTGATGCTGCTACTTCTGATCTCTCTATATTTGTGGGGGACTTGGCCATAGATGTTACTGATGCTATGCTGTTTGGTGATGAAAATGAGAGGACAAGGGCAATGACTGAAATGAATGGCATTTATTGTTCAAGTAGGCCTATGAGAATAGGTGTTGCAACACCCAAGAAAACTTATGGCTATCAGCAACAATACTCTTCACAAGCTGTGGTGTTGGCCGGTGGACACCCATCTAATGGTGTTGTGGCCCAAGGTTCCCAGGCTGAAGGGGATGTTAACAACACAACTATCTTTGTTGGAGGGCTTGATTCTGATATTGGTGATGATGATCTCAGACAACCCTTTTTGCAATTTGGTGAGGTTGTCTCTGTGAAGATTCCAGTGGGTAAAGGGTGTGGCTTTGTTCAATTTGCTAACAGGAAAAATGCTGAGGAAGCAATTCAGGCATTGAATGGGACTGTAATCGGGAAGCAGACAGTGCGTCTTTCATGGGGTCGCAGTCCAGGAAATAAGCATTGGAGGGCTGATTCCAATGGAAACCATTATGGTGGTCAAGGTTACGGAAACCATGGATATGCTGTGAAACAGAATCAGGATATAGCAGTGCAGCCTGCTGCTGCAATTCAAGGGGCTTCATAA 1251 0.4956 MAQATNGGDLNQNGQQQNQQQWAQPHQYQQQWMAMQYPATAMAMMQQQMMMYPQHYVPYIHPHHYQPPPPPPAAHHHHHQQQHHFKQQHTPPPSSQQHHNNHHGQQKQQSGSNGEEIRTIWLGDLHHWMDENYLVNCFAHTGEVLSAKVIRNKQTGSSEGYGFVEFYSRATAEKVLQNYNGTMMPSTDQAFRLNWATFSTGDRRSDAATSDLSIFVGDLAIDVTDAMLFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKTYGYQQQYSSQAVVLAGGHPSNGVVAQGSQAEGDVNNTTIFVGGLDSDIGDDDLRQPFLQFGEVVSVKIPVGKGCGFVQFANRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRADSNGNHYGGQGYGNHGYAVKQNQDIAVQPAAAIQGAS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183746g00001 416 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 97 229 - -
Stsc183746g00001 416 FunFam Polyadenylate-binding protein RBP47 281 397 - -
Stsc183746g00001 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 198 IPR000504 GO:0003723
Stsc183746g00001 416 Gene3D - 72 209 IPR012677 -
Stsc183746g00001 416 SUPERFAMILY RNA-binding domain, RBD 116 261 IPR035979 GO:0003676
Stsc183746g00001 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 371 IPR000504 GO:0003723
Stsc183746g00001 416 FunFam Polyadenylate-binding protein RBP47B 117 197 - -
Stsc183746g00001 416 SUPERFAMILY RNA-binding domain, RBD 290 395 IPR035979 GO:0003676
Stsc183746g00001 416 MobiDBLite consensus disorder prediction 86 114 - -
Stsc183746g00001 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 364 IPR000504 GO:0003723
Stsc183746g00001 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 186 IPR000504 GO:0003723
Stsc183746g00001 416 MobiDBLite consensus disorder prediction 1 23 - -
Stsc183746g00001 416 Gene3D - 282 402 IPR012677 -
Stsc183746g00001 416 SMART rrm1_1 300 367 IPR000504 GO:0003723
Stsc183746g00001 416 SMART rrm1_1 119 194 IPR000504 GO:0003723
Stsc183746g00001 416 CDD RRM1_SECp43_like 119 199 - -
Stsc183746g00001 416 MobiDBLite consensus disorder prediction 62 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183746g00001 Stsc-Chr183746 974 4900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183746g00001 119 364 Eukaryotic Initiation Factors Gene Family AT2G36660 24.254 4.79e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183746g00001 - - gmx:100798089 533.102