Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183728g00001 ATGAAACCGGGCATGAGATCCGGTGGCCCTTCTAGGGTTTTGGTGAAGAACAGGGGCTCTTCAGGGTGTTTGATTGTTAAGAAGAAAGGTGATAGATTGAGTGGTGGGGTTGGCAGCTCTTCGAACTCCAAGAAGATGTATGCATCGAAGAAAGTGAATAAAAAGAAGTATGAAGCAAAGAAAGTGAAGAAGAGGCCCAAGGTTGAGTTGAGTAGTAGTGATTCGGAATCGAGTGAGGAGCTATTGATGCCACCTGCTAGAAGGCTTGGTCCTGAGACCATTCGAGTATGCAATGGTTTGACTGCCGTCGAGCGGGATGAGGTTGGTGGCAGTGGAACCGGGAGGAAGCGGGAGAGGTTTGAGGACATTAGGCATAACGGTGATGAGATAGGGGAGGGAAAGGATTTGGAGAGTAGGGAAAAGAAACGTAGTAAGATTGATGTGTTTGATTTTGATGAATATGATGATATGGATGCAGACATGATGAGGAGGAGCCATTTAGATAGCAGTGGGGGCAGCTTTGGAGGGGGAAGGTCTGCGGGAGCAACACATGCTGCTAGAAGTGGCAATGATAGGGAATTCAAAACTGGTTCAAGCAAACACACTGTTAATAAGAGAAAGAACTCCCATTATGACAAGGCAAGTAGCTTGCACTCAGAAGATATTAAATTAAAGAAGAGGGATGCAGCTCAGCATCGTCAACCCTTGCCAGAGGAGAAGTTTAATTCTGAAGAATCCATTAGGGTTCAAGGGAAAAATGGTGTTTTGAAGGTGATGGTTAACAAGATGTGTAGTCCATCGGATCACCATGATAATTCCAAACATGTAGAAGGGCGACGAAGTTTGAGAGCTGAGGGCATTGCCAAGAAGAATGTTCTGGTACAGGCATCATCTTACATGGAAAAAAACCCTGTTACGAAACAAGGTTTACATGCTAGGACAGAGAAGAAATTGGTAGCAACAAGAAAATCTTTGTCAAGTAACAACAGTAAGGATGATGAGCAGGGTTCAGATCAGAGTGACACATCATTGAAAGTGGGAGTAAAGTGCATTAAAGCTTTCAAGTCTTTAAAGAGGGGGACCTCTGACGATGAACAAACTCCTAAGCAGGAAAAAACCCCAACCACAACGGGAGCTAAAGAGGAGAAAATAAGGCGTGGTAGTAGCACAGAAAAGCAGAAGCTACGAGAACAGATACGGGAGATGCTTCTTAATGCAGGTTGGACCATAGACTATCGCCCTCGGAGGAATAGAGACTATCTTGATGCAGTTTACATTAATCCTGGGGGTACAGCCTATTGGTCTATCATCAAGGCCTATGAGGCACTTCAGAAGCAATTGAATGATAACGATCCTAGGGCCATGCCCAAAGGGAAGTGCTCTTTTGCTCGTATCGCAGATGATGTGCTTAGTCAGTTAACAAGGAATACTCAGAAGAAGATGGAGAAAGAGTTAAGGAAGAAGAAAAAGCAGAAGGAAGGAGATGATAGTGATAGTGACAGTGGAAAAGAACCTCGCATTAAGAGATCTTTAAGCAACAAGTGTGATGTGAATGGCATGGAAAGTGATAGTGATGAAGAGATATTAAGCTCCTTTATAAAGCGGGGGCGTAAATCAATGAAAAATAAAATGATTGAAAAGATTGTTAACAGTTGTAGATCTGTGAGCCAGAAAGCTGTCCTTCACCCAAATGAAGGAACTGAAAAATCACTTTCAGGAAATGATCCTCATCAACTACATGGGAGGAAAAGTAGAAAGCATGGAAGGTGTACTTTATTGGTTCGTAGTTCCAAAAATTCAGAGTGTGATGACTTTGTTCCATATATGGGCAAACGAACAGTGCTTTCCTGGTTGATTGACTCTGGAGCTGTACAGTTAAGCCAAAAGGTTCAGTATCGTAGAAGGAAACGTATAATGCAGGAGGGATGGGTCACCAGGGATGGGATTCACTGTGGTTGCTGTAGTAAAATACTCACTGTTTCCAAGTTTGAGCTTCATGCAGGAAGTAATTTGCGCCAGCCATATCAAAACATATATTTGGACTCTGGAGATTCTCTTCTACAGTGCCAGATAGATGCATGGAATAAACAAGACAATTCTGAGAAAATTGCTTTCCATCCAGTAGATATTGATGGTAATGATCCAAATGATGATACTTGTGGAATATGTGGAGATGGAGGGGATTTGATCTGTTGTGATGGTTGTCCATCAACATTTCATTTGAGTTGCTTGAATATACAGATGCTCCCCCCTGGTGAATGGCATTGTCCAAATTGCACATGCAAATTTTGTGGAGCAGTCTGTGGTCCTGTAAACAAAGAAGATGAATCAACTTTATATGCCCTGCATAGATGCAACTTATGCAATAAAAAATTTCATGAATGTTGTGCTAAGGAGATGAAAACCCCTCCTACTAACTCTGACGTGTCAAGGCCTTCCTTTTGCGGAAGGGGCTGCAAAGAGCTTTTTGAGCACTTGAAGAAATACCTTGGTACCAGGCATGAATTAGATGGAGGCTTTACATGGTCTCTCATTCATAGAACAGAAGACGAATCAGAGGCATCTAGTAGGGGCATTATTCAGAGGGTGGAATGCAACTCCAAGCTAGCTGTTGCATTGACTGTGATGGATGAATGCTTTTTGCCAGTTGTTGATAGGAGAAGTGGGGTCAATTTAATACATAATGTTTTATATAATAGTGGGTAA 2706 0.4246 MKPGMRSGGPSRVLVKNRGSSGCLIVKKKGDRLSGGVGSSSNSKKMYASKKVNKKKYEAKKVKKRPKVELSSSDSESSEELLMPPARRLGPETIRVCNGLTAVERDEVGGSGTGRKRERFEDIRHNGDEIGEGKDLESREKKRSKIDVFDFDEYDDMDADMMRRSHLDSSGGSFGGGRSAGATHAARSGNDREFKTGSSKHTVNKRKNSHYDKASSLHSEDIKLKKRDAAQHRQPLPEEKFNSEESIRVQGKNGVLKVMVNKMCSPSDHHDNSKHVEGRRSLRAEGIAKKNVLVQASSYMEKNPVTKQGLHARTEKKLVATRKSLSSNNSKDDEQGSDQSDTSLKVGVKCIKAFKSLKRGTSDDEQTPKQEKTPTTTGAKEEKIRRGSSTEKQKLREQIREMLLNAGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYEALQKQLNDNDPRAMPKGKCSFARIADDVLSQLTRNTQKKMEKELRKKKKQKEGDDSDSDSGKEPRIKRSLSNKCDVNGMESDSDEEILSSFIKRGRKSMKNKMIEKIVNSCRSVSQKAVLHPNEGTEKSLSGNDPHQLHGRKSRKHGRCTLLVRSSKNSECDDFVPYMGKRTVLSWLIDSGAVQLSQKVQYRRRKRIMQEGWVTRDGIHCGCCSKILTVSKFELHAGSNLRQPYQNIYLDSGDSLLQCQIDAWNKQDNSEKIAFHPVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHLSCLNIQMLPPGEWHCPNCTCKFCGAVCGPVNKEDESTLYALHRCNLCNKKFHECCAKEMKTPPTNSDVSRPSFCGRGCKELFEHLKKYLGTRHELDGGFTWSLIHRTEDESEASSRGIIQRVECNSKLAVALTVMDECFLPVVDRRSGVNLIHNVLYNSG 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183728g00001 901 Pfam Tify domain binding domain 642 692 IPR032308 -
Stsc183728g00001 901 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 709 810 IPR013083 -
Stsc183728g00001 901 MobiDBLite consensus disorder prediction 1 20 - -
Stsc183728g00001 901 SMART PHD_3 719 760 IPR001965 -
Stsc183728g00001 901 MobiDBLite consensus disorder prediction 563 586 - -
Stsc183728g00001 901 Pfam PHD-finger 720 762 IPR019787 -
Stsc183728g00001 901 MobiDBLite consensus disorder prediction 477 511 - -
Stsc183728g00001 901 MobiDBLite consensus disorder prediction 358 393 - -
Stsc183728g00001 901 MobiDBLite consensus disorder prediction 162 248 - -
Stsc183728g00001 901 MobiDBLite consensus disorder prediction 208 246 - -
Stsc183728g00001 901 MobiDBLite consensus disorder prediction 109 142 - -
Stsc183728g00001 901 MobiDBLite consensus disorder prediction 105 142 - -
Stsc183728g00001 901 SUPERFAMILY FYVE/PHD zinc finger 704 761 IPR011011 -
Stsc183728g00001 901 MobiDBLite consensus disorder prediction 25 87 - -
Stsc183728g00001 901 CDD PHD2_CHD_II 720 759 - -
Stsc183728g00001 901 MobiDBLite consensus disorder prediction 321 342 - -
Stsc183728g00001 901 PANTHER PHD FINGER PROTEIN 12 340 901 IPR042163 GO:0003714|GO:0045892
Stsc183728g00001 901 MobiDBLite consensus disorder prediction 474 522 - -
Stsc183728g00001 901 ProSitePatterns Zinc finger PHD-type signature. 720 759 IPR019786 -
Stsc183728g00001 901 MobiDBLite consensus disorder prediction 48 62 - -
Stsc183728g00001 901 ProSiteProfiles Zinc finger PHD-type profile. 717 762 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183728g00001 Stsc-Chr183728 3980 7272 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183728g00001 4 901 PHD Transcription Factor Family AT4G14920 44.625 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc183728g00001 TDBD 4.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183728g00001 - - gmx:102666194 1033.09