Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183702g00001 ATGGCTTCTTCAAGCATGGACGGATCAATCCCCACCATGGACGAATTTGAGGCGCTCTTGTCAACCACCGACGTCGAGCTTCTCAAGAGAGCTTGGCGTAGCGAGAAGGCTTCTCCCGAGATTCTCCGCTACGATACCGATCTTGTTTCCCGTCTCACCGAACAGATTCAATTGATGGAAGAAACTGTGGAGGAGAAATCTACCAGTGGCGCCGACCCGCTTTCGTTGTCTTTATATCAGATGGACTTGGATAGGACTCTCTTTCTCTTGAGATCATATCTTCGGGTCCGCATACAAAAGATTGAAAAATACATGTTCCACATCCGAAAAACTGATGAGCTATGGAATAGGTTATCTAAAGGGGAGAAAGATTTCACCTCAAGGAAAGGCTCTTCTAATCTACATGCATATGCTTACCGATATTATGCTTCCTTGGTTTTTGAATCTAACGAATTTTCTTGTTGCAGGTGCATAGAAGACCTAAAACAACATCTTGAGGAGAGTGTCCTTTCGAAATTGCCTGAAAATTATCAATCTGTTGAGAAGCAATCTGTAATAAGTGAAGAGGATGACATGGTTCCAGAACCACGCCTAGACACATTTGTCTTATGTCGAAGCAAGGAGTATCTCTCTGGCATTCAACTTGAAGATGGACCTGTTGATGACAGGTCGAAGCTCTTCGAGATGGAGCCAGGTGTCCTTTACTTCATATGTTACAAATCAATAAAGCCACTTGTGGAGAGTGGCAAAATTGATCTTCTCTGA 765 0.4353 MASSSMDGSIPTMDEFEALLSTTDVELLKRAWRSEKASPEILRYDTDLVSRLTEQIQLMEETVEEKSTSGADPLSLSLYQMDLDRTLFLLRSYLRVRIQKIEKYMFHIRKTDELWNRLSKGEKDFTSRKGSSNLHAYAYRYYASLVFESNEFSCCRCIEDLKQHLEESVLSKLPENYQSVEKQSVISEEDDMVPEPRLDTFVLCRSKEYLSGIQLEDGPVDDRSKLFEMEPGVLYFICYKSIKPLVESGKIDLL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183702g00001 254 PANTHER SLD5 PROTEIN 156 254 IPR008591 GO:0006261
Stsc183702g00001 254 PIRSF GINS_Sld5 143 254 IPR008591 GO:0006261
Stsc183702g00001 254 PIRSF GINS_Sld5 2 150 IPR008591 GO:0006261
Stsc183702g00001 254 CDD GINS_B_Sld5 196 254 IPR031633 -
Stsc183702g00001 254 SUPERFAMILY GINS helical bundle-like 21 184 IPR036224 -
Stsc183702g00001 254 Pfam DNA replication complex GINS protein SLD5 C-terminus 196 254 IPR031633 -
Stsc183702g00001 254 Coils Coil 49 69 - -
Stsc183702g00001 254 Gene3D - 12 244 - -
Stsc183702g00001 254 CDD GINS_A_Sld5 24 125 IPR038749 -
Stsc183702g00001 254 Pfam GINS complex protein 54 122 IPR021151 -
Stsc183702g00001 254 SUPERFAMILY PriA/YqbF domain 198 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183702g00001 Stsc-Chr183702 2073 4820 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183702g00001 1 192 Core DNA Replication Machinery Family AT5G49010 53.125 1.84e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183702g00001 K10735 - qsa:O6P43_008399 345.51