Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc183685g00001 ATGTCAAACATAACAAGTTGTGATAGTGGGAGCTTCTCAACAGAGAACACAACAGCACCAATATTATTAGAAGATTCAGTTGTAAAACAACAACAATCTTCAGAGATACTTGGTGCTGCTAGATTCCATCATAGTCCACATTCTCATACTTCAACAACAAATAATAATAATAACAATAGCAATGGTTCCAACACAAATTCTCAACCTCCTCCTCCTCCACCTCCTAAGAAGAAAAGGAACCTACCAGGAAACCCAGATCCGAGTGCTGAAGTGATAGCTCTATCACCAACAACACTAATGGCAACAAACCGATTCATATGCGAAATATGCAACAAAGGGTTCCAAAGGGACCAGAACCTTCAGCTTCATCGGCGAGGTCACAACCTGCCGTGGAAGCTGAAGCAGCGAACAAGTACAGAAATAAGGAAGAGAGTGTACGTGTGTCCTGAGCCCTCGTGCGTTCACCACAATCCCGCGAGGGCGTTGGGTGACCTCACGGGGATCAAGAAACACTTTTGTAGGAAGCATGGTGAGAAAAAGTGGAAATGTGATAAGTGCTCAAAGAAATATGCTGTTCAGTCTGACTGGAAGGCACATTCCAAAATATGCGGTACAAGGGAGTACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGATAGCTTCATCACCCACAGAGCATTCTGTGACGCACTTGCTGAAGAGAACAACAACAATAACCATGGGGGATCATCATTATTCCCAAACATACCTTCAAATCTCCAATCAAACCTCCTTCTTCCCTCTCTACCAACCGCAACCACCACCACTCTTTCATCATCTTCATCACTCCCTCCTCATCATGACATCATCATTCCAAAACCCTCATTCAACTTCCCCAACACCCCCACTTCACACCCTTCTCTTCAACTCACCTCAAACATCTTCGATCACAACTCCTTCCACTTAACTGCCTCCTCTTCGTCCCCGGCGCCGCACATGTCAGCCACCGCGTTGCTCCAAAAAGCAGCGCAAATGGGTGCAACCGTCAGCAGCAACAACAACATTGTAGTAGTTGAGAATAACAATGATAATAACCACAAAAGCGGCGGTTACACAACCGCCACAACAAGCATGGCGCCGCCATCGTTCAGCGGAGTGGTAGTACCACCACCACCACCACCACCAATGCAGCAACAAAATGTGAATAACAATAAGAGTTTATTCATGAACCAGTTGATGCAACAAGACACCAGCACCATGGCAAATGCTGTTGCTGCAGCTACACCTCATCATCATCATCAGTATGGTAGTAACAATCTGATGTGTGGAATGAACGGTGTGGAGATGTTCAACGCAATATTGGATCAAAGCAAGGCACTCTGCAAGATCATTGACCAAAACAACAACAACCACAATAATGCGTTAATCAAAAGGGGTGGTACCAAGGGTGGTGGTGGTGGTGATAATGATGTGATGACTTTGGACTTGTTGGGAATAGGTGGTGGTGGTGGTGGTGGAAGTAGTGGTTTCTATGGTGGTGGTAATAATAATAACCACCAACAAGGAGATAATAATAATGGTGGCGTAAGTGTAAGAGATGAGGTCTGGAATTGGTCAACGAAGAATGTCAACGCAGGTTTTGAATCCTTTTCAGCAACAAGCAGCATTTGA 1653 0.4495 MSNITSCDSGSFSTENTTAPILLEDSVVKQQQSSEILGAARFHHSPHSHTSTTNNNNNNSNGSNTNSQPPPPPPPKKKRNLPGNPDPSAEVIALSPTTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNNNNHGGSSLFPNIPSNLQSNLLLPSLPTATTTTLSSSSSLPPHHDIIIPKPSFNFPNTPTSHPSLQLTSNIFDHNSFHLTASSSSPAPHMSATALLQKAAQMGATVSSNNNIVVVENNNDNNHKSGGYTTATTSMAPPSFSGVVVPPPPPPPMQQQNVNNNKSLFMNQLMQQDTSTMANAVAAATPHHHHQYGSNNLMCGMNGVEMFNAILDQSKALCKIIDQNNNNHNNALIKRGGTKGGGGGDNDVMTLDLLGIGGGGGGGSSGFYGGGNNNNHQQGDNNNGGVSVRDEVWNWSTKNVNAGFESFSATSSI 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc183685g00001 550 MobiDBLite consensus disorder prediction 23 38 - -
Stsc183685g00001 550 Gene3D Classic Zinc Finger 160 239 - -
Stsc183685g00001 550 Pfam Zinc-finger double-stranded RNA-binding 105 127 IPR022755 -
Stsc183685g00001 550 MobiDBLite consensus disorder prediction 23 89 - -
Stsc183685g00001 550 Gene3D Classic Zinc Finger 84 150 - -
Stsc183685g00001 550 SUPERFAMILY beta-beta-alpha zinc fingers 104 201 IPR036236 -
Stsc183685g00001 550 SMART c2h2final6 146 176 IPR013087 -
Stsc183685g00001 550 SMART c2h2final6 181 201 IPR013087 -
Stsc183685g00001 550 SMART c2h2final6 105 127 IPR013087 -
Stsc183685g00001 550 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Stsc183685g00001 550 MobiDBLite consensus disorder prediction 45 65 - -
Stsc183685g00001 550 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 127 IPR013087 -
Stsc183685g00001 550 MobiDBLite consensus disorder prediction 66 81 - -
Stsc183685g00001 550 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 53 509 IPR031140 -
Stsc183685g00001 550 FunFam protein indeterminate-domain 12-like 84 152 - -
Stsc183685g00001 550 FunFam protein indeterminate-domain 5, chloroplastic-like 159 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc183685g00001 Stsc-Chr183685 267 5182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc183685g00001 50 344 IDZ Gene Family AT3G50700 55.786 5.94e-117 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc183685g00001 zf-C2H2_jaz 8.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc183685g00001 - - adu:107465334 627.091